Hb_012340_060

Information

Type -
Description -
Location Contig12340: 40714-47248
Sequence    

Annotation

kegg
ID rcu:RCOM_0143500
description hypothetical protein
nr
ID XP_002534114.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q55DL2
description Histidine protein methyltransferase 1 homolog OS=Dictyostelium discoideum GN=DDB_G0270580 PE=3 SV=1
trembl
ID B9T795
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0143500 PE=4 SV=1
Gene Ontology
ID GO:0008168
description histidine protein methyltransferase 1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07130: 40692-47109
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012340_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001105_110 0.1267444538 - - conserved hypothetical protein [Ricinus communis]
3 Hb_168319_010 0.1302764746 - - PREDICTED: ACT domain-containing protein ACR4 isoform X2 [Jatropha curcas]
4 Hb_002232_430 0.1325379908 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
5 Hb_027654_080 0.1325765225 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like isoform X1 [Jatropha curcas]
6 Hb_004429_020 0.1371014075 - - PREDICTED: magnesium transporter MRS2-5 [Jatropha curcas]
7 Hb_001341_100 0.1399370121 - - hypothetical protein JCGZ_05568 [Jatropha curcas]
8 Hb_000723_230 0.1434584331 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
9 Hb_000057_140 0.1456892132 - - Mitochondrial carnitine/acylcarnitine carrier protein, putative [Ricinus communis]
10 Hb_010891_020 0.1486941175 - - Cucumisin precursor, putative [Ricinus communis]
11 Hb_000684_040 0.1494887929 - - PREDICTED: E3 ubiquitin-protein ligase MBR1 [Jatropha curcas]
12 Hb_001147_050 0.1502955911 - - PREDICTED: probable serine/threonine-protein kinase Cx32, chloroplastic [Jatropha curcas]
13 Hb_002217_100 0.1523423445 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase dihydrolipoamide dehydrogenase, putative [Ricinus communis]
14 Hb_025708_020 0.1525753269 - - receptor protein kinase, putative [Ricinus communis]
15 Hb_006637_030 0.1542361005 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]
16 Hb_009193_100 0.1556095768 - - hypothetical protein JCGZ_15709 [Jatropha curcas]
17 Hb_029385_010 0.1578609646 - - CTP synthase family protein [Populus trichocarpa]
18 Hb_002027_030 0.1604197003 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001277_050 0.1606573729 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic [Jatropha curcas]
20 Hb_000465_300 0.1609679337 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]

Gene co-expression network

sample Hb_012340_060 Hb_012340_060 Hb_001105_110 Hb_001105_110 Hb_012340_060--Hb_001105_110 Hb_168319_010 Hb_168319_010 Hb_012340_060--Hb_168319_010 Hb_002232_430 Hb_002232_430 Hb_012340_060--Hb_002232_430 Hb_027654_080 Hb_027654_080 Hb_012340_060--Hb_027654_080 Hb_004429_020 Hb_004429_020 Hb_012340_060--Hb_004429_020 Hb_001341_100 Hb_001341_100 Hb_012340_060--Hb_001341_100 Hb_000086_630 Hb_000086_630 Hb_001105_110--Hb_000086_630 Hb_001105_110--Hb_004429_020 Hb_001635_190 Hb_001635_190 Hb_001105_110--Hb_001635_190 Hb_000270_120 Hb_000270_120 Hb_001105_110--Hb_000270_120 Hb_002471_090 Hb_002471_090 Hb_001105_110--Hb_002471_090 Hb_000243_260 Hb_000243_260 Hb_001105_110--Hb_000243_260 Hb_002027_030 Hb_002027_030 Hb_168319_010--Hb_002027_030 Hb_025708_010 Hb_025708_010 Hb_168319_010--Hb_025708_010 Hb_025708_020 Hb_025708_020 Hb_168319_010--Hb_025708_020 Hb_001619_040 Hb_001619_040 Hb_168319_010--Hb_001619_040 Hb_000123_220 Hb_000123_220 Hb_168319_010--Hb_000123_220 Hb_006637_030 Hb_006637_030 Hb_002232_430--Hb_006637_030 Hb_001147_050 Hb_001147_050 Hb_002232_430--Hb_001147_050 Hb_000684_040 Hb_000684_040 Hb_002232_430--Hb_000684_040 Hb_000465_150 Hb_000465_150 Hb_002232_430--Hb_000465_150 Hb_005686_130 Hb_005686_130 Hb_002232_430--Hb_005686_130 Hb_000638_130 Hb_000638_130 Hb_002232_430--Hb_000638_130 Hb_010891_020 Hb_010891_020 Hb_027654_080--Hb_010891_020 Hb_000529_280 Hb_000529_280 Hb_027654_080--Hb_000529_280 Hb_001616_110 Hb_001616_110 Hb_027654_080--Hb_001616_110 Hb_001277_050 Hb_001277_050 Hb_027654_080--Hb_001277_050 Hb_000645_200 Hb_000645_200 Hb_027654_080--Hb_000645_200 Hb_003913_130 Hb_003913_130 Hb_004429_020--Hb_003913_130 Hb_000140_090 Hb_000140_090 Hb_004429_020--Hb_000140_090 Hb_004429_020--Hb_001635_190 Hb_002119_130 Hb_002119_130 Hb_004429_020--Hb_002119_130 Hb_010578_080 Hb_010578_080 Hb_004429_020--Hb_010578_080 Hb_000964_030 Hb_000964_030 Hb_004429_020--Hb_000964_030 Hb_004631_210 Hb_004631_210 Hb_001341_100--Hb_004631_210 Hb_004993_060 Hb_004993_060 Hb_001341_100--Hb_004993_060 Hb_001486_030 Hb_001486_030 Hb_001341_100--Hb_001486_030 Hb_003442_070 Hb_003442_070 Hb_001341_100--Hb_003442_070 Hb_004064_010 Hb_004064_010 Hb_001341_100--Hb_004064_010 Hb_000465_300 Hb_000465_300 Hb_001341_100--Hb_000465_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.97835 32.5121 28.0472 25.9933 2.32093 3.18147
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.6402 26.9674 32.3543 32.6241 17.0142

CAGE analysis