Hb_012340_080

Information

Type -
Description -
Location Contig12340: 60262-63040
Sequence    

Annotation

kegg
ID rcu:RCOM_0143720
description protein farnesyltransferase alpha subunit, putative (EC:2.5.1.59)
nr
ID XP_002534116.1
description protein farnesyltransferase alpha subunit, putative [Ricinus communis]
swissprot
ID O24304
description Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Pisum sativum GN=FTA PE=1 SV=1
trembl
ID B9T797
description Protein farnesyltransferase alpha subunit, putative OS=Ricinus communis GN=RCOM_0143720 PE=4 SV=1
Gene Ontology
ID GO:0005953
description protein farnesyltransferase geranylgeranyltransferase type-1 subunit alpha

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07135: 60274-62979
cDNA
(Sanger)
(ID:Location)		 002_P12.ab1: 60274-62521 , 028_C12.ab1: 60274-62451

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012340_080 0.0 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
2 Hb_021443_070 0.0878157987 - - PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X1 [Jatropha curcas]
3 Hb_001564_130 0.0883511195 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
4 Hb_010368_020 0.0903274575 - - PREDICTED: uncharacterized protein LOC105630301 [Jatropha curcas]
5 Hb_001379_060 0.091648926 - - PREDICTED: uncharacterized protein LOC105650815 isoform X1 [Jatropha curcas]
6 Hb_000661_250 0.0918800513 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
7 Hb_000302_010 0.0950490168 - - Vesicle-associated membrane protein, putative [Ricinus communis]
8 Hb_011537_010 0.0958116633 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
9 Hb_015978_060 0.0963841024 - - unnamed protein product [Vitis vinifera]
10 Hb_000866_270 0.0969187226 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
11 Hb_002233_150 0.0977243113 - - PREDICTED: uncharacterized protein LOC105633093 [Jatropha curcas]
12 Hb_000154_080 0.0978220515 transcription factor TF Family: bZIP PREDICTED: probable transcription factor PosF21 [Jatropha curcas]
13 Hb_002346_020 0.098332202 - - -
14 Hb_001159_140 0.0987347189 - - hypothetical protein POPTR_0001s08090g [Populus trichocarpa]
15 Hb_026198_050 0.1003443651 - - PREDICTED: subtilisin-like protease SBT3.3 [Jatropha curcas]
16 Hb_009838_090 0.1013725714 - - PREDICTED: uncharacterized protein LOC105638421 isoform X2 [Jatropha curcas]
17 Hb_001259_090 0.1024493998 - - hypothetical protein B456_005G056700 [Gossypium raimondii]
18 Hb_003078_040 0.1033036809 - - PREDICTED: hit family protein 1 isoform X1 [Jatropha curcas]
19 Hb_003878_190 0.1038099736 - - hypothetical protein POPTR_0011s11040g [Populus trichocarpa]
20 Hb_007154_020 0.1044596637 - - -

Gene co-expression network

sample Hb_012340_080 Hb_012340_080 Hb_021443_070 Hb_021443_070 Hb_012340_080--Hb_021443_070 Hb_001564_130 Hb_001564_130 Hb_012340_080--Hb_001564_130 Hb_010368_020 Hb_010368_020 Hb_012340_080--Hb_010368_020 Hb_001379_060 Hb_001379_060 Hb_012340_080--Hb_001379_060 Hb_000661_250 Hb_000661_250 Hb_012340_080--Hb_000661_250 Hb_000302_010 Hb_000302_010 Hb_012340_080--Hb_000302_010 Hb_004440_090 Hb_004440_090 Hb_021443_070--Hb_004440_090 Hb_000160_170 Hb_000160_170 Hb_021443_070--Hb_000160_170 Hb_000015_080 Hb_000015_080 Hb_021443_070--Hb_000015_080 Hb_000046_280 Hb_000046_280 Hb_021443_070--Hb_000046_280 Hb_004735_040 Hb_004735_040 Hb_021443_070--Hb_004735_040 Hb_003292_040 Hb_003292_040 Hb_001564_130--Hb_003292_040 Hb_000670_020 Hb_000670_020 Hb_001564_130--Hb_000670_020 Hb_001512_060 Hb_001512_060 Hb_001564_130--Hb_001512_060 Hb_011970_030 Hb_011970_030 Hb_001564_130--Hb_011970_030 Hb_001564_130--Hb_010368_020 Hb_001348_070 Hb_001348_070 Hb_001564_130--Hb_001348_070 Hb_005016_090 Hb_005016_090 Hb_010368_020--Hb_005016_090 Hb_000771_080 Hb_000771_080 Hb_010368_020--Hb_000771_080 Hb_010368_020--Hb_000670_020 Hb_010368_020--Hb_001348_070 Hb_001195_760 Hb_001195_760 Hb_010368_020--Hb_001195_760 Hb_001828_090 Hb_001828_090 Hb_001379_060--Hb_001828_090 Hb_007101_150 Hb_007101_150 Hb_001379_060--Hb_007101_150 Hb_002205_080 Hb_002205_080 Hb_001379_060--Hb_002205_080 Hb_001512_070 Hb_001512_070 Hb_001379_060--Hb_001512_070 Hb_000684_090 Hb_000684_090 Hb_001379_060--Hb_000684_090 Hb_000270_270 Hb_000270_270 Hb_001379_060--Hb_000270_270 Hb_001259_090 Hb_001259_090 Hb_000661_250--Hb_001259_090 Hb_096563_010 Hb_096563_010 Hb_000661_250--Hb_096563_010 Hb_000462_140 Hb_000462_140 Hb_000661_250--Hb_000462_140 Hb_001635_170 Hb_001635_170 Hb_000661_250--Hb_001635_170 Hb_002007_060 Hb_002007_060 Hb_000661_250--Hb_002007_060 Hb_002233_150 Hb_002233_150 Hb_000661_250--Hb_002233_150 Hb_001489_060 Hb_001489_060 Hb_000302_010--Hb_001489_060 Hb_000302_010--Hb_004735_040 Hb_001481_170 Hb_001481_170 Hb_000302_010--Hb_001481_170 Hb_000302_010--Hb_001564_130 Hb_000580_090 Hb_000580_090 Hb_000302_010--Hb_000580_090 Hb_007477_070 Hb_007477_070 Hb_000302_010--Hb_007477_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
49.7953 23.7946 22.3233 23.1432 70.7771 31.7998
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
56.3852 66.5484 32.4387 19.2659 9.5987

CAGE analysis