Hb_012347_010

Information

Type transcription factor
Description TF Family: AP2
Location Contig12347: 4767-11827
Sequence    

Annotation

kegg
ID rcu:RCOM_1317700
description DNA binding protein, putative (EC:1.3.1.74)
nr
ID KDP41049.1
description hypothetical protein JCGZ_03155 [Jatropha curcas]
swissprot
ID Q6X5Y6
description Ethylene-responsive transcription factor WRI1 OS=Arabidopsis thaliana GN=WRI1 PE=2 SV=1
trembl
ID A0A067LAB4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03155 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor wri1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07139: 4577-5339
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012347_010 0.0 transcription factor TF Family: AP2 hypothetical protein JCGZ_03155 [Jatropha curcas]
2 Hb_002027_300 0.0605732258 - - PREDICTED: rho GTPase-activating protein 2 [Jatropha curcas]
3 Hb_000957_040 0.0764853831 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
4 Hb_010872_060 0.0872591572 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
5 Hb_124315_040 0.0969397406 - - hypothetical protein 19 [Hevea brasiliensis]
6 Hb_001140_160 0.100497156 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
7 Hb_000130_390 0.1069461304 - - PREDICTED: glutamate receptor 2.8-like [Pyrus x bretschneideri]
8 Hb_000762_020 0.1108264387 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]
9 Hb_006120_200 0.1220278914 - - PREDICTED: uncharacterized protein LOC103333282 [Prunus mume]
10 Hb_001631_070 0.1242469525 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
11 Hb_003018_180 0.1269559515 - - PREDICTED: WEB family protein At3g51220-like [Jatropha curcas]
12 Hb_029584_140 0.1306349461 - - senescence-associated family protein [Populus trichocarpa]
13 Hb_001315_020 0.1310023361 - - ring finger protein, putative [Ricinus communis]
14 Hb_012799_060 0.1375021178 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
15 Hb_055335_010 0.1385428555 - - PREDICTED: tetraspanin-2 [Jatropha curcas]
16 Hb_000580_170 0.1404546013 - - PREDICTED: arginase 1, mitochondrial [Jatropha curcas]
17 Hb_003745_010 0.1438689456 transcription factor TF Family: AP2 hypothetical protein JCGZ_03155 [Jatropha curcas]
18 Hb_003540_230 0.1455047032 - - PREDICTED: sphingosine kinase 1 isoform X1 [Jatropha curcas]
19 Hb_001141_470 0.1516253048 - - PREDICTED: uncharacterized protein LOC101254423 [Solanum lycopersicum]
20 Hb_005396_040 0.1523745018 - - ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_012347_010 Hb_012347_010 Hb_002027_300 Hb_002027_300 Hb_012347_010--Hb_002027_300 Hb_000957_040 Hb_000957_040 Hb_012347_010--Hb_000957_040 Hb_010872_060 Hb_010872_060 Hb_012347_010--Hb_010872_060 Hb_124315_040 Hb_124315_040 Hb_012347_010--Hb_124315_040 Hb_001140_160 Hb_001140_160 Hb_012347_010--Hb_001140_160 Hb_000130_390 Hb_000130_390 Hb_012347_010--Hb_000130_390 Hb_002027_300--Hb_000957_040 Hb_001315_020 Hb_001315_020 Hb_002027_300--Hb_001315_020 Hb_002027_300--Hb_001140_160 Hb_006120_200 Hb_006120_200 Hb_002027_300--Hb_006120_200 Hb_002027_300--Hb_010872_060 Hb_000762_020 Hb_000762_020 Hb_000957_040--Hb_000762_020 Hb_000957_040--Hb_001140_160 Hb_000957_040--Hb_000130_390 Hb_000957_040--Hb_010872_060 Hb_010872_060--Hb_001140_160 Hb_001631_070 Hb_001631_070 Hb_010872_060--Hb_001631_070 Hb_010872_060--Hb_124315_040 Hb_012799_060 Hb_012799_060 Hb_010872_060--Hb_012799_060 Hb_124315_040--Hb_000957_040 Hb_003540_230 Hb_003540_230 Hb_124315_040--Hb_003540_230 Hb_005396_040 Hb_005396_040 Hb_124315_040--Hb_005396_040 Hb_029584_140 Hb_029584_140 Hb_124315_040--Hb_029584_140 Hb_001140_160--Hb_000762_020 Hb_004738_090 Hb_004738_090 Hb_001140_160--Hb_004738_090 Hb_003018_180 Hb_003018_180 Hb_001140_160--Hb_003018_180 Hb_000500_310 Hb_000500_310 Hb_001140_160--Hb_000500_310 Hb_000130_390--Hb_003018_180 Hb_002298_040 Hb_002298_040 Hb_000130_390--Hb_002298_040 Hb_000130_390--Hb_001140_160 Hb_005016_130 Hb_005016_130 Hb_000130_390--Hb_005016_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.6201 0.759756 0.797967 1.34187 6.25282 7.50538
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.4501 7.95037 13.2733 0.694132 0.494388

CAGE analysis