Hb_012355_010

Information

Type -
Description -
Location Contig12355: 248-720
Sequence    

Annotation

kegg
ID pvu:PHAVU_009G108000g
description hypothetical protein
nr
ID XP_012073251.1
description PREDICTED: probable protein Pop3 [Jatropha curcas]
swissprot
ID Q9LUV2
description Probable protein Pop3 OS=Arabidopsis thaliana GN=At3g17210 PE=1 SV=1
trembl
ID K7KTW4
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0005829
description probable protein pop3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012355_010 0.0 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
2 Hb_176232_040 0.0133163637 - - conserved hypothetical protein [Ricinus communis]
3 Hb_156683_010 0.0176449904 - - PREDICTED: uncharacterized protein At5g65660-like [Jatropha curcas]
4 Hb_000028_540 0.0196152596 - - hypothetical protein POPTR_0012s03720g [Populus trichocarpa]
5 Hb_002231_140 0.0217488974 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
6 Hb_003407_020 0.0297908555 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
7 Hb_001862_020 0.0341780412 - - PREDICTED: uncharacterized protein LOC103652604 [Zea mays]
8 Hb_006142_010 0.0433611843 - - hypothetical protein CICLE_v10013815mg, partial [Citrus clementina]
9 Hb_146361_020 0.0472212003 - - PREDICTED: germin-like protein subfamily 1 member 11 [Jatropha curcas]
10 Hb_186115_010 0.0488393487 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
11 Hb_001863_050 0.0496441083 - - PREDICTED: wall-associated receptor kinase-like 8 [Jatropha curcas]
12 Hb_000115_180 0.0530629111 - - hypothetical protein RCOM_1308310 [Ricinus communis]
13 Hb_002903_030 0.0593774804 - - polyphenol oxidase [Cydonia oblonga]
14 Hb_003938_220 0.0861486589 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
15 Hb_005656_110 0.1003945691 - - cytochrome P450, putative [Ricinus communis]
16 Hb_000248_090 0.1103312247 - - PREDICTED: uncharacterized protein LOC104110417 [Nicotiana tomentosiformis]
17 Hb_000576_080 0.1184791708 - - conserved hypothetical protein [Ricinus communis]
18 Hb_148383_010 0.1299603561 - - PREDICTED: protein YLS9 [Jatropha curcas]
19 Hb_001901_040 0.1319484745 - - hypothetical protein CARUB_v10027638mg [Capsella rubella]
20 Hb_004607_010 0.1394504692 - - -

Gene co-expression network

sample Hb_012355_010 Hb_012355_010 Hb_176232_040 Hb_176232_040 Hb_012355_010--Hb_176232_040 Hb_156683_010 Hb_156683_010 Hb_012355_010--Hb_156683_010 Hb_000028_540 Hb_000028_540 Hb_012355_010--Hb_000028_540 Hb_002231_140 Hb_002231_140 Hb_012355_010--Hb_002231_140 Hb_003407_020 Hb_003407_020 Hb_012355_010--Hb_003407_020 Hb_001862_020 Hb_001862_020 Hb_012355_010--Hb_001862_020 Hb_176232_040--Hb_003407_020 Hb_176232_040--Hb_001862_020 Hb_176232_040--Hb_156683_010 Hb_176232_040--Hb_000028_540 Hb_146361_020 Hb_146361_020 Hb_176232_040--Hb_146361_020 Hb_156683_010--Hb_000028_540 Hb_156683_010--Hb_002231_140 Hb_006142_010 Hb_006142_010 Hb_156683_010--Hb_006142_010 Hb_001863_050 Hb_001863_050 Hb_156683_010--Hb_001863_050 Hb_000028_540--Hb_002231_140 Hb_000028_540--Hb_006142_010 Hb_000028_540--Hb_001863_050 Hb_002231_140--Hb_006142_010 Hb_002231_140--Hb_001863_050 Hb_000115_180 Hb_000115_180 Hb_002231_140--Hb_000115_180 Hb_003407_020--Hb_001862_020 Hb_003407_020--Hb_146361_020 Hb_186115_010 Hb_186115_010 Hb_003407_020--Hb_186115_010 Hb_002903_030 Hb_002903_030 Hb_003407_020--Hb_002903_030 Hb_001862_020--Hb_146361_020 Hb_001862_020--Hb_186115_010 Hb_001862_020--Hb_002903_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.148566 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.360099 0

CAGE analysis