Hb_012366_020

Information

Type -
Description -
Location Contig12366: 18887-25809
Sequence    

Annotation

kegg
ID cic:CICLE_v10018832mg
description hypothetical protein
nr
ID CBI25249.3
description unnamed protein product [Vitis vinifera]
swissprot
ID O82318
description Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=2 SV=1
trembl
ID K4C386
description Uncharacterized protein OS=Solanum lycopersicum GN=Solyc06g006040.1 PE=4 SV=1
Gene Ontology
ID GO:0004672
description leucine-rich repeat protein kinase family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07206: 19081-19679 , PASA_asmbl_07207: 19731-20956 , PASA_asmbl_07208: 24700-25350
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012366_020 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_002260_090 0.128443853 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
3 Hb_030765_020 0.134468474 - - ABC transporter family protein [Hevea brasiliensis]
4 Hb_000003_840 0.1427497659 - - multidrug/pheromone exporter protein [Hevea brasiliensis]
5 Hb_002936_050 0.1443056036 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR18 isoform X2 [Jatropha curcas]
6 Hb_000836_500 0.1457780265 - - Late embryogenesis abundant protein Lea14-A, putative [Ricinus communis]
7 Hb_000178_110 0.1459217428 - - conserved hypothetical protein [Ricinus communis]
8 Hb_014497_110 0.1467240684 - - PREDICTED: AT-hook motif nuclear-localized protein 25-like [Jatropha curcas]
9 Hb_000934_030 0.1510314353 - - -
10 Hb_042729_010 0.1546136435 - - -
11 Hb_029584_140 0.1569198572 - - senescence-associated family protein [Populus trichocarpa]
12 Hb_000143_050 0.1583378325 - - PREDICTED: MFP1 attachment factor 1-like [Jatropha curcas]
13 Hb_003581_090 0.1606289586 - - PREDICTED: galactose oxidase [Jatropha curcas]
14 Hb_001213_120 0.1607179446 - - PREDICTED: immediate early response 3-interacting protein 1-like [Brassica rapa]
15 Hb_002909_060 0.1607243199 - - 3-5 exonuclease, putative [Ricinus communis]
16 Hb_007120_070 0.1611682256 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
17 Hb_000062_580 0.1621338571 - - ATP binding protein, putative [Ricinus communis]
18 Hb_004206_030 0.1631362225 - - PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
19 Hb_002291_030 0.1632842024 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
20 Hb_012725_110 0.1645080388 - - hypothetical protein JCGZ_09397 [Jatropha curcas]

Gene co-expression network

sample Hb_012366_020 Hb_012366_020 Hb_002260_090 Hb_002260_090 Hb_012366_020--Hb_002260_090 Hb_030765_020 Hb_030765_020 Hb_012366_020--Hb_030765_020 Hb_000003_840 Hb_000003_840 Hb_012366_020--Hb_000003_840 Hb_002936_050 Hb_002936_050 Hb_012366_020--Hb_002936_050 Hb_000836_500 Hb_000836_500 Hb_012366_020--Hb_000836_500 Hb_000178_110 Hb_000178_110 Hb_012366_020--Hb_000178_110 Hb_014497_110 Hb_014497_110 Hb_002260_090--Hb_014497_110 Hb_001213_120 Hb_001213_120 Hb_002260_090--Hb_001213_120 Hb_011671_400 Hb_011671_400 Hb_002260_090--Hb_011671_400 Hb_003052_040 Hb_003052_040 Hb_002260_090--Hb_003052_040 Hb_005908_040 Hb_005908_040 Hb_002260_090--Hb_005908_040 Hb_000143_050 Hb_000143_050 Hb_030765_020--Hb_000143_050 Hb_012799_060 Hb_012799_060 Hb_030765_020--Hb_012799_060 Hb_000078_030 Hb_000078_030 Hb_030765_020--Hb_000078_030 Hb_060668_010 Hb_060668_010 Hb_030765_020--Hb_060668_010 Hb_001741_080 Hb_001741_080 Hb_030765_020--Hb_001741_080 Hb_000580_170 Hb_000580_170 Hb_030765_020--Hb_000580_170 Hb_000003_840--Hb_002936_050 Hb_042729_010 Hb_042729_010 Hb_000003_840--Hb_042729_010 Hb_002685_090 Hb_002685_090 Hb_000003_840--Hb_002685_090 Hb_143629_090 Hb_143629_090 Hb_000003_840--Hb_143629_090 Hb_080477_050 Hb_080477_050 Hb_000003_840--Hb_080477_050 Hb_012725_110 Hb_012725_110 Hb_000003_840--Hb_012725_110 Hb_002936_050--Hb_042729_010 Hb_000419_040 Hb_000419_040 Hb_002936_050--Hb_000419_040 Hb_012522_030 Hb_012522_030 Hb_002936_050--Hb_012522_030 Hb_001278_050 Hb_001278_050 Hb_002936_050--Hb_001278_050 Hb_002897_060 Hb_002897_060 Hb_002936_050--Hb_002897_060 Hb_000836_500--Hb_000178_110 Hb_000836_500--Hb_012725_110 Hb_002291_030 Hb_002291_030 Hb_000836_500--Hb_002291_030 Hb_002928_110 Hb_002928_110 Hb_000836_500--Hb_002928_110 Hb_029584_140 Hb_029584_140 Hb_000836_500--Hb_029584_140 Hb_000836_500--Hb_002936_050 Hb_000178_110--Hb_029584_140 Hb_007120_070 Hb_007120_070 Hb_000178_110--Hb_007120_070 Hb_000178_110--Hb_012725_110 Hb_000178_110--Hb_012799_060 Hb_000178_110--Hb_000580_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.973 4.15419 0.0691465 0.528545 4.82266 3.62174
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.0995 17.6811 16.6564 1.47116 0.080296

CAGE analysis