Hb_012366_050

Information

Type -
Description -
Location Contig12366: 99990-102413
Sequence    

Annotation

kegg
ID vvi:100267225
description G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1
nr
ID XP_012067096.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [Jatropha curcas]
swissprot
ID P93756
description G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 OS=Arabidopsis thaliana GN=SD31 PE=3 SV=1
trembl
ID A0A067LDD5
description Serine/threonine-protein kinase OS=Jatropha curcas GN=JCGZ_01892 PE=3 SV=1
Gene Ontology
ID GO:0000166
description g-type lectin s-receptor-like serine threonine-protein kinase sd3-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07210: 101017-102597
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012366_050 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [Jatropha curcas]
2 Hb_110558_010 0.0993765445 - - PREDICTED: uncharacterized protein LOC105641877 [Jatropha curcas]
3 Hb_001123_190 0.120884791 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 15-like [Jatropha curcas]
4 Hb_009449_100 0.1265054332 - - PREDICTED: equilibrative nucleotide transporter 1 [Jatropha curcas]
5 Hb_026698_020 0.1300029379 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
6 Hb_001514_240 0.130234974 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
7 Hb_048476_040 0.1305192828 - - PREDICTED: uncharacterized protein LOC104611656 [Nelumbo nucifera]
8 Hb_054865_050 0.1324953982 - - calcium-dependent protein kinase, putative [Ricinus communis]
9 Hb_002259_220 0.1405898078 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 66 [Jatropha curcas]
10 Hb_178818_010 0.141178497 - - CRINKLY4 related 3, putative [Theobroma cacao]
11 Hb_003226_090 0.1422467084 - - PREDICTED: bifunctional epoxide hydrolase 2 [Jatropha curcas]
12 Hb_001318_150 0.1455521353 - - PREDICTED: shaggy-related protein kinase alpha-like [Jatropha curcas]
13 Hb_001195_230 0.1458184125 - - PREDICTED: 3-ketoacyl-CoA synthase 4 [Jatropha curcas]
14 Hb_000329_790 0.1500188781 - - PREDICTED: uncharacterized protein LOC105643367 [Jatropha curcas]
15 Hb_001240_050 0.1525224228 - - PREDICTED: CSC1-like protein At1g32090 [Jatropha curcas]
16 Hb_005064_070 0.1531309032 - - PREDICTED: uncharacterized protein LOC105648318 [Jatropha curcas]
17 Hb_000477_070 0.1539209607 - - histone h2a, putative [Ricinus communis]
18 Hb_132840_020 0.1543480531 - - PREDICTED: protein LHY [Jatropha curcas]
19 Hb_000086_640 0.1558404119 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
20 Hb_086639_050 0.1575193265 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_012366_050 Hb_012366_050 Hb_110558_010 Hb_110558_010 Hb_012366_050--Hb_110558_010 Hb_001123_190 Hb_001123_190 Hb_012366_050--Hb_001123_190 Hb_009449_100 Hb_009449_100 Hb_012366_050--Hb_009449_100 Hb_026698_020 Hb_026698_020 Hb_012366_050--Hb_026698_020 Hb_001514_240 Hb_001514_240 Hb_012366_050--Hb_001514_240 Hb_048476_040 Hb_048476_040 Hb_012366_050--Hb_048476_040 Hb_110558_010--Hb_001123_190 Hb_003226_090 Hb_003226_090 Hb_110558_010--Hb_003226_090 Hb_005504_030 Hb_005504_030 Hb_110558_010--Hb_005504_030 Hb_054865_050 Hb_054865_050 Hb_110558_010--Hb_054865_050 Hb_004032_090 Hb_004032_090 Hb_110558_010--Hb_004032_090 Hb_001123_190--Hb_004032_090 Hb_001123_190--Hb_048476_040 Hb_001123_190--Hb_026698_020 Hb_083078_010 Hb_083078_010 Hb_001123_190--Hb_083078_010 Hb_009449_100--Hb_054865_050 Hb_009449_100--Hb_001514_240 Hb_005064_070 Hb_005064_070 Hb_009449_100--Hb_005064_070 Hb_002259_220 Hb_002259_220 Hb_009449_100--Hb_002259_220 Hb_009449_100--Hb_026698_020 Hb_000329_790 Hb_000329_790 Hb_009449_100--Hb_000329_790 Hb_026698_020--Hb_001514_240 Hb_000417_410 Hb_000417_410 Hb_026698_020--Hb_000417_410 Hb_002888_040 Hb_002888_040 Hb_026698_020--Hb_002888_040 Hb_001195_230 Hb_001195_230 Hb_026698_020--Hb_001195_230 Hb_132840_030 Hb_132840_030 Hb_026698_020--Hb_132840_030 Hb_001514_240--Hb_002259_220 Hb_001499_070 Hb_001499_070 Hb_001514_240--Hb_001499_070 Hb_013968_010 Hb_013968_010 Hb_001514_240--Hb_013968_010 Hb_187005_010 Hb_187005_010 Hb_001514_240--Hb_187005_010 Hb_048476_040--Hb_005064_070 Hb_132840_020 Hb_132840_020 Hb_048476_040--Hb_132840_020 Hb_048476_040--Hb_000329_790 Hb_005080_020 Hb_005080_020 Hb_048476_040--Hb_005080_020 Hb_048476_040--Hb_054865_050 Hb_001294_050 Hb_001294_050 Hb_048476_040--Hb_001294_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.63872 6.92585 9.0507 4.02485 0.115536 0.512313
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.507899 0.476503 1.4622 4.59339 4.89015

CAGE analysis