Hb_012368_070

Information

Type -
Description -
Location Contig12368: 28173-28682
Sequence    

Annotation

kegg
ID rcu:RCOM_1043550
description RNA binding protein, putative
nr
ID XP_002523454.1
description RNA binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SBT5
description RNA binding protein, putative OS=Ricinus communis GN=RCOM_1043550 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012368_070 0.0 - - RNA binding protein, putative [Ricinus communis]
2 Hb_001798_020 0.2670345077 - - PREDICTED: uncharacterized protein LOC104594032 [Nelumbo nucifera]
3 Hb_007849_010 0.2873165604 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Populus euphratica]
4 Hb_001104_050 0.2894822242 - - -
5 Hb_005144_190 0.2895526226 - - hypothetical protein F383_09558 [Gossypium arboreum]
6 Hb_007317_080 0.2902098726 - - PREDICTED: ferredoxin, root R-B2 [Jatropha curcas]
7 Hb_000694_060 0.2905325554 - - Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative [Ricinus communis]
8 Hb_003052_230 0.2908541955 - - conserved hypothetical protein [Ricinus communis]
9 Hb_164646_010 0.292107787 - - PREDICTED: acidic endochitinase-like [Pyrus x bretschneideri]
10 Hb_008759_020 0.3030808517 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 2-like [Jatropha curcas]
11 Hb_003687_220 0.303255418 transcription factor TF Family: MYB hypothetical protein POPTR_0008s16660g [Populus trichocarpa]
12 Hb_000599_310 0.3113386495 - - PREDICTED: pleckstrin homology domain-containing family A member 8-like [Jatropha curcas]
13 Hb_001449_100 0.3227822568 - - PREDICTED: transcription factor bHLH149 [Jatropha curcas]
14 Hb_006420_090 0.3247250394 - - PREDICTED: zinc finger protein 5 [Jatropha curcas]
15 Hb_006816_400 0.3250623614 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
16 Hb_000886_030 0.3252240652 - - PREDICTED: uncharacterized protein LOC105113410 [Populus euphratica]
17 Hb_004679_060 0.325978992 - - conserved hypothetical protein [Ricinus communis]
18 Hb_008289_050 0.3277620618 - - hypothetical protein B456_001G045900 [Gossypium raimondii]
19 Hb_026740_010 0.3291702858 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
20 Hb_011609_110 0.3294248703 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]

Gene co-expression network

sample Hb_012368_070 Hb_012368_070 Hb_001798_020 Hb_001798_020 Hb_012368_070--Hb_001798_020 Hb_007849_010 Hb_007849_010 Hb_012368_070--Hb_007849_010 Hb_001104_050 Hb_001104_050 Hb_012368_070--Hb_001104_050 Hb_005144_190 Hb_005144_190 Hb_012368_070--Hb_005144_190 Hb_007317_080 Hb_007317_080 Hb_012368_070--Hb_007317_080 Hb_000694_060 Hb_000694_060 Hb_012368_070--Hb_000694_060 Hb_001798_020--Hb_001104_050 Hb_001391_120 Hb_001391_120 Hb_001798_020--Hb_001391_120 Hb_008479_020 Hb_008479_020 Hb_001798_020--Hb_008479_020 Hb_003052_230 Hb_003052_230 Hb_001798_020--Hb_003052_230 Hb_024898_020 Hb_024898_020 Hb_001798_020--Hb_024898_020 Hb_003120_040 Hb_003120_040 Hb_007849_010--Hb_003120_040 Hb_000007_430 Hb_000007_430 Hb_007849_010--Hb_000007_430 Hb_000984_260 Hb_000984_260 Hb_007849_010--Hb_000984_260 Hb_002918_130 Hb_002918_130 Hb_007849_010--Hb_002918_130 Hb_001675_030 Hb_001675_030 Hb_007849_010--Hb_001675_030 Hb_000599_310 Hb_000599_310 Hb_007849_010--Hb_000599_310 Hb_001104_050--Hb_001391_120 Hb_006503_010 Hb_006503_010 Hb_001104_050--Hb_006503_010 Hb_000853_040 Hb_000853_040 Hb_001104_050--Hb_000853_040 Hb_001470_070 Hb_001470_070 Hb_001104_050--Hb_001470_070 Hb_005144_190--Hb_001470_070 Hb_000886_030 Hb_000886_030 Hb_005144_190--Hb_000886_030 Hb_003687_220 Hb_003687_220 Hb_005144_190--Hb_003687_220 Hb_005144_190--Hb_000599_310 Hb_002631_300 Hb_002631_300 Hb_005144_190--Hb_002631_300 Hb_001623_070 Hb_001623_070 Hb_005144_190--Hb_001623_070 Hb_002374_380 Hb_002374_380 Hb_007317_080--Hb_002374_380 Hb_007317_080--Hb_000694_060 Hb_021888_120 Hb_021888_120 Hb_007317_080--Hb_021888_120 Hb_000270_740 Hb_000270_740 Hb_007317_080--Hb_000270_740 Hb_017170_030 Hb_017170_030 Hb_007317_080--Hb_017170_030 Hb_007317_080--Hb_001675_030 Hb_000694_060--Hb_002374_380 Hb_000868_100 Hb_000868_100 Hb_000694_060--Hb_000868_100 Hb_007017_010 Hb_007017_010 Hb_000694_060--Hb_007017_010 Hb_008948_120 Hb_008948_120 Hb_000694_060--Hb_008948_120 Hb_000948_080 Hb_000948_080 Hb_000694_060--Hb_000948_080 Hb_002236_050 Hb_002236_050 Hb_000694_060--Hb_002236_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.172521 0.176543 0.061863 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.129944 0.612536 0 0.381273 0

CAGE analysis