Hb_012379_010

Information

Type -
Description -
Location Contig12379: 2003-2958
Sequence    

Annotation

kegg
ID rcu:RCOM_1524280
description hypothetical protein
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012379_010 0.0 - - -
2 Hb_004241_010 0.167022449 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
3 Hb_090065_010 0.2090404134 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
4 Hb_002157_090 0.2518435423 - - hypothetical protein VITISV_041741 [Vitis vinifera]
5 Hb_001269_290 0.2585572566 - - PREDICTED: uncharacterized protein LOC103438859 [Malus domestica]
6 Hb_015586_010 0.2674666222 - - PREDICTED: flavonol sulfotransferase-like [Jatropha curcas]
7 Hb_000111_230 0.2758600338 - - -
8 Hb_012008_010 0.2764799077 - - -
9 Hb_001584_030 0.2807981775 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like [Nelumbo nucifera]
10 Hb_011972_010 0.2884567951 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001771_080 0.2982917353 - - PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2 [Amborella trichopoda]
12 Hb_006816_400 0.2989164383 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
13 Hb_001022_040 0.3013722669 - - PREDICTED: uncharacterized protein LOC105634753 [Jatropha curcas]
14 Hb_002631_300 0.3057890918 - - PREDICTED: uncharacterized protein LOC105646181 [Jatropha curcas]
15 Hb_011689_130 0.3085935459 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 isoform X1 [Jatropha curcas]
16 Hb_001016_070 0.3107734018 - - PREDICTED: putative MO25-like protein At5g47540 [Jatropha curcas]
17 Hb_005144_190 0.3158257704 - - hypothetical protein F383_09558 [Gossypium arboreum]
18 Hb_004102_030 0.3189539121 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
19 Hb_002259_140 0.3223792931 - - -
20 Hb_001623_070 0.3271643616 - - cytochrome B5 isoform 1, putative [Ricinus communis]

Gene co-expression network

sample Hb_012379_010 Hb_012379_010 Hb_004241_010 Hb_004241_010 Hb_012379_010--Hb_004241_010 Hb_090065_010 Hb_090065_010 Hb_012379_010--Hb_090065_010 Hb_002157_090 Hb_002157_090 Hb_012379_010--Hb_002157_090 Hb_001269_290 Hb_001269_290 Hb_012379_010--Hb_001269_290 Hb_015586_010 Hb_015586_010 Hb_012379_010--Hb_015586_010 Hb_000111_230 Hb_000111_230 Hb_012379_010--Hb_000111_230 Hb_004241_010--Hb_002157_090 Hb_004241_010--Hb_000111_230 Hb_002259_140 Hb_002259_140 Hb_004241_010--Hb_002259_140 Hb_001584_030 Hb_001584_030 Hb_004241_010--Hb_001584_030 Hb_000414_150 Hb_000414_150 Hb_004241_010--Hb_000414_150 Hb_090065_010--Hb_015586_010 Hb_000318_080 Hb_000318_080 Hb_090065_010--Hb_000318_080 Hb_002631_300 Hb_002631_300 Hb_090065_010--Hb_002631_300 Hb_003687_030 Hb_003687_030 Hb_090065_010--Hb_003687_030 Hb_001117_120 Hb_001117_120 Hb_090065_010--Hb_001117_120 Hb_002157_090--Hb_001584_030 Hb_001563_020 Hb_001563_020 Hb_002157_090--Hb_001563_020 Hb_002157_090--Hb_015586_010 Hb_012008_010 Hb_012008_010 Hb_002157_090--Hb_012008_010 Hb_006907_100 Hb_006907_100 Hb_001269_290--Hb_006907_100 Hb_164255_010 Hb_164255_010 Hb_001269_290--Hb_164255_010 Hb_005928_050 Hb_005928_050 Hb_001269_290--Hb_005928_050 Hb_155541_010 Hb_155541_010 Hb_001269_290--Hb_155541_010 Hb_074836_010 Hb_074836_010 Hb_001269_290--Hb_074836_010 Hb_118094_010 Hb_118094_010 Hb_015586_010--Hb_118094_010 Hb_015586_010--Hb_001584_030 Hb_001959_250 Hb_001959_250 Hb_015586_010--Hb_001959_250 Hb_009976_010 Hb_009976_010 Hb_015586_010--Hb_009976_010 Hb_069022_010 Hb_069022_010 Hb_000111_230--Hb_069022_010 Hb_005714_050 Hb_005714_050 Hb_000111_230--Hb_005714_050 Hb_032974_010 Hb_032974_010 Hb_000111_230--Hb_032974_010 Hb_000111_230--Hb_000414_150 Hb_000111_230--Hb_002157_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.227487 0.276693 0.19546 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.268426 0.527197 0 0 0

CAGE analysis