Hb_012384_030

Information

Type -
Description -
Location Contig12384: 28464-37265
Sequence    

Annotation

kegg
ID cic:CICLE_v10028809mg
description hypothetical protein
nr
ID XP_012079450.1
description PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L5-like [Jatropha curcas]
swissprot
ID Q9Y5K5
description Ubiquitin carboxyl-terminal hydrolase isozyme L5 OS=Homo sapiens GN=UCHL5 PE=1 SV=3
trembl
ID A0A067LN06
description Ubiquitin carboxyl-terminal hydrolase OS=Jatropha curcas GN=JCGZ_17421 PE=3 SV=1
Gene Ontology
ID GO:0005634
description ubiquitin carboxyl-terminal hydrolase isozyme l5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07228: 28401-37267 , PASA_asmbl_07230: 34215-34450
cDNA
(Sanger)
(ID:Location)		 002_N13.ab1: 28406-36256 , 031_M14.ab1: 28406-36325 , 048_N01.ab1: 28406-36379

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012384_030 0.0 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L5-like [Jatropha curcas]
2 Hb_000402_120 0.0476716506 - - PREDICTED: uncharacterized protein LOC105634656 [Jatropha curcas]
3 Hb_001776_060 0.0489601359 - - PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Jatropha curcas]
4 Hb_000866_410 0.0570450595 - - hypothetical protein JCGZ_14422 [Jatropha curcas]
5 Hb_003929_280 0.0587314647 transcription factor TF Family: CAMTA calmodulin-binding transcription activator (camta), plants, putative [Ricinus communis]
6 Hb_002217_110 0.0633330304 - - PREDICTED: craniofacial development protein 1 [Jatropha curcas]
7 Hb_003927_040 0.0647567767 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
8 Hb_000260_680 0.0676293201 - - PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2-A [Jatropha curcas]
9 Hb_001456_060 0.0707839105 - - hypothetical protein JCGZ_17090 [Jatropha curcas]
10 Hb_000339_040 0.071740519 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
11 Hb_002876_230 0.0718519102 - - PREDICTED: uncharacterized protein LOC105633933 [Jatropha curcas]
12 Hb_001751_140 0.0730443071 - - PREDICTED: uncharacterized protein LOC105648510 isoform X1 [Jatropha curcas]
13 Hb_004236_050 0.0731265976 - - PREDICTED: nipped-B-like protein A [Jatropha curcas]
14 Hb_032264_060 0.0755933141 - - hypothetical protein JCGZ_02506 [Jatropha curcas]
15 Hb_000331_110 0.0769220609 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
16 Hb_004052_080 0.0769995606 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000390_230 0.0773950119 - - PREDICTED: transducin beta-like protein 3 [Jatropha curcas]
18 Hb_000144_070 0.0777717761 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004837_180 0.0780851125 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
20 Hb_007007_120 0.0781737074 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_012384_030 Hb_012384_030 Hb_000402_120 Hb_000402_120 Hb_012384_030--Hb_000402_120 Hb_001776_060 Hb_001776_060 Hb_012384_030--Hb_001776_060 Hb_000866_410 Hb_000866_410 Hb_012384_030--Hb_000866_410 Hb_003929_280 Hb_003929_280 Hb_012384_030--Hb_003929_280 Hb_002217_110 Hb_002217_110 Hb_012384_030--Hb_002217_110 Hb_003927_040 Hb_003927_040 Hb_012384_030--Hb_003927_040 Hb_032264_060 Hb_032264_060 Hb_000402_120--Hb_032264_060 Hb_000402_120--Hb_001776_060 Hb_001636_050 Hb_001636_050 Hb_000402_120--Hb_001636_050 Hb_013394_030 Hb_013394_030 Hb_000402_120--Hb_013394_030 Hb_032202_080 Hb_032202_080 Hb_000402_120--Hb_032202_080 Hb_000260_680 Hb_000260_680 Hb_001776_060--Hb_000260_680 Hb_000144_070 Hb_000144_070 Hb_001776_060--Hb_000144_070 Hb_001776_060--Hb_032202_080 Hb_001776_060--Hb_002217_110 Hb_007290_030 Hb_007290_030 Hb_001776_060--Hb_007290_030 Hb_000866_410--Hb_002217_110 Hb_008453_140 Hb_008453_140 Hb_000866_410--Hb_008453_140 Hb_120410_010 Hb_120410_010 Hb_000866_410--Hb_120410_010 Hb_029142_060 Hb_029142_060 Hb_000866_410--Hb_029142_060 Hb_004093_090 Hb_004093_090 Hb_000866_410--Hb_004093_090 Hb_004236_050 Hb_004236_050 Hb_003929_280--Hb_004236_050 Hb_004837_180 Hb_004837_180 Hb_003929_280--Hb_004837_180 Hb_003929_280--Hb_003927_040 Hb_000803_070 Hb_000803_070 Hb_003929_280--Hb_000803_070 Hb_003929_280--Hb_002217_110 Hb_002217_110--Hb_004837_180 Hb_002217_110--Hb_000260_680 Hb_001456_060 Hb_001456_060 Hb_002217_110--Hb_001456_060 Hb_001751_140 Hb_001751_140 Hb_003927_040--Hb_001751_140 Hb_000645_170 Hb_000645_170 Hb_003927_040--Hb_000645_170 Hb_060094_020 Hb_060094_020 Hb_003927_040--Hb_060094_020 Hb_008568_020 Hb_008568_020 Hb_003927_040--Hb_008568_020 Hb_140049_040 Hb_140049_040 Hb_003927_040--Hb_140049_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
69.7497 69.8713 89.5485 39.9433 66.6377 58.755
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.4327 61.7584 49.8551 41.0409 58.0874

CAGE analysis