Hb_012393_030

Information

Type -
Description -
Location Contig12393: 105892-109577
Sequence    

Annotation

kegg
ID pop:POPTR_0010s18360g
description POPTRDRAFT_770098; NADP-dependent isocitrate dehydrogenase family protein
nr
ID XP_002315093.2
description NADP-dependent isocitrate dehydrogenase family protein [Populus trichocarpa]
swissprot
ID P50218
description Isocitrate dehydrogenase [NADP] OS=Nicotiana tabacum PE=2 SV=1
trembl
ID B9HYD8
description Isocitrate dehydrogenase [NADP] OS=Populus trichocarpa GN=POPTR_0010s18360g PE=3 SV=2
Gene Ontology
ID GO:0005886
description isocitrate dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07251: 105961-108963 , PASA_asmbl_07252: 105961-108963
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012393_030 0.0 - - NADP-dependent isocitrate dehydrogenase family protein [Populus trichocarpa]
2 Hb_006059_030 0.0677689966 - - glutamate dehydrogenase, putative [Ricinus communis]
3 Hb_000841_050 0.0725320064 - - hypothetical protein L484_019972 [Morus notabilis]
4 Hb_003159_050 0.0745767895 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial isoform X1 [Jatropha curcas]
5 Hb_001195_400 0.075564033 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
6 Hb_001493_150 0.077906765 - - PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]
7 Hb_005601_040 0.0813114467 - - Histone deacetylase 1 isoform 1 [Theobroma cacao]
8 Hb_012733_040 0.0824689109 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
9 Hb_000185_220 0.0865646332 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
10 Hb_001946_390 0.0873004268 - - PREDICTED: NADH-cytochrome b5 reductase-like protein [Jatropha curcas]
11 Hb_001957_010 0.0937288143 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g14410 isoform X1 [Jatropha curcas]
12 Hb_001269_130 0.0943196888 - - plant poly(A)+ RNA export protein, putative [Ricinus communis]
13 Hb_035273_020 0.0955440643 - - PREDICTED: amidase 1-like isoform X1 [Jatropha curcas]
14 Hb_002301_100 0.0956614504 - - hypothetical protein JCGZ_21479 [Jatropha curcas]
15 Hb_009615_060 0.0956673824 - - PREDICTED: prolyl endopeptidase-like [Jatropha curcas]
16 Hb_001269_600 0.0965756561 - - protein phosphatase 2c, putative [Ricinus communis]
17 Hb_000364_050 0.0978489939 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
18 Hb_000580_120 0.0981118805 - - PREDICTED: transketolase, chloroplastic [Jatropha curcas]
19 Hb_000656_010 0.0989391822 - - PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]
20 Hb_000120_370 0.0991173445 - - type 2 diacylglycerol acyltransferase [Ricinus communis]

Gene co-expression network

sample Hb_012393_030 Hb_012393_030 Hb_006059_030 Hb_006059_030 Hb_012393_030--Hb_006059_030 Hb_000841_050 Hb_000841_050 Hb_012393_030--Hb_000841_050 Hb_003159_050 Hb_003159_050 Hb_012393_030--Hb_003159_050 Hb_001195_400 Hb_001195_400 Hb_012393_030--Hb_001195_400 Hb_001493_150 Hb_001493_150 Hb_012393_030--Hb_001493_150 Hb_005601_040 Hb_005601_040 Hb_012393_030--Hb_005601_040 Hb_000364_050 Hb_000364_050 Hb_006059_030--Hb_000364_050 Hb_012733_040 Hb_012733_040 Hb_006059_030--Hb_012733_040 Hb_005976_080 Hb_005976_080 Hb_006059_030--Hb_005976_080 Hb_000107_270 Hb_000107_270 Hb_006059_030--Hb_000107_270 Hb_006059_030--Hb_001195_400 Hb_002477_290 Hb_002477_290 Hb_000841_050--Hb_002477_290 Hb_001221_020 Hb_001221_020 Hb_000841_050--Hb_001221_020 Hb_004880_150 Hb_004880_150 Hb_000841_050--Hb_004880_150 Hb_000663_060 Hb_000663_060 Hb_000841_050--Hb_000663_060 Hb_001269_130 Hb_001269_130 Hb_000841_050--Hb_001269_130 Hb_001269_600 Hb_001269_600 Hb_003159_050--Hb_001269_600 Hb_007933_040 Hb_007933_040 Hb_003159_050--Hb_007933_040 Hb_003159_050--Hb_012733_040 Hb_007741_120 Hb_007741_120 Hb_003159_050--Hb_007741_120 Hb_009615_060 Hb_009615_060 Hb_003159_050--Hb_009615_060 Hb_000078_140 Hb_000078_140 Hb_001195_400--Hb_000078_140 Hb_170138_010 Hb_170138_010 Hb_001195_400--Hb_170138_010 Hb_001195_400--Hb_012733_040 Hb_000359_210 Hb_000359_210 Hb_001195_400--Hb_000359_210 Hb_000185_220 Hb_000185_220 Hb_001195_400--Hb_000185_220 Hb_003206_110 Hb_003206_110 Hb_001195_400--Hb_003206_110 Hb_001493_150--Hb_009615_060 Hb_002301_100 Hb_002301_100 Hb_001493_150--Hb_002301_100 Hb_001493_150--Hb_001221_020 Hb_005648_010 Hb_005648_010 Hb_001493_150--Hb_005648_010 Hb_021576_010 Hb_021576_010 Hb_001493_150--Hb_021576_010 Hb_001629_030 Hb_001629_030 Hb_005601_040--Hb_001629_030 Hb_005601_040--Hb_001195_400 Hb_001818_100 Hb_001818_100 Hb_005601_040--Hb_001818_100 Hb_005601_040--Hb_005976_080 Hb_005601_040--Hb_000185_220 Hb_003305_040 Hb_003305_040 Hb_005601_040--Hb_003305_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.96291 4.05511 11.5789 11.9379 4.47698 6.4882
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.78799 6.97708 9.57327 15.7121 13.6173

CAGE analysis