Hb_012395_040

Information

Type -
Description -
Location Contig12395: 9689-10937
Sequence    

Annotation

kegg
ID rcu:RCOM_1217930
description hypothetical protein
nr
ID XP_002528376.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SQV7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1217930 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012395_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000116_050 0.048208122 - - PREDICTED: G2/mitotic-specific cyclin-2-like isoform X2 [Jatropha curcas]
3 Hb_001279_110 0.0508290721 - - PREDICTED: uncharacterized protein LOC105633338 isoform X4 [Jatropha curcas]
4 Hb_005618_070 0.0531114073 - - PREDICTED: uncharacterized protein LOC105643318 [Jatropha curcas]
5 Hb_001257_070 0.0615002483 - - PREDICTED: aspartic proteinase nepenthesin-1-like [Jatropha curcas]
6 Hb_000060_030 0.0615484486 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like [Jatropha curcas]
7 Hb_005288_090 0.0617040631 - - PREDICTED: uncharacterized protein LOC105647753 [Jatropha curcas]
8 Hb_001541_140 0.0627927626 - - PREDICTED: probable protein phosphatase 2C 14 [Jatropha curcas]
9 Hb_002928_150 0.0632306793 - - PREDICTED: cyclin-B2-4-like [Jatropha curcas]
10 Hb_009113_060 0.067244816 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001969_120 0.0726169164 - - PREDICTED: plectin [Jatropha curcas]
12 Hb_003776_050 0.0782062581 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
13 Hb_000340_550 0.0794474654 - - PREDICTED: rho GTPase-activating protein 2 [Jatropha curcas]
14 Hb_001998_180 0.0796104352 - - actin binding protein, putative [Ricinus communis]
15 Hb_005914_100 0.0822417248 - - conserved hypothetical protein [Ricinus communis]
16 Hb_034420_010 0.082447311 - - glutathione S-transferase [Caragana korshinskii]
17 Hb_181744_010 0.084234477 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
18 Hb_080952_060 0.0858651203 - - PREDICTED: patellin-4 [Populus euphratica]
19 Hb_003398_050 0.0876930144 - - B-type cell cycle switch protein ccs52B [Populus trichocarpa]
20 Hb_000671_020 0.0884913872 - - PREDICTED: RNA-binding protein 38 [Jatropha curcas]

Gene co-expression network

sample Hb_012395_040 Hb_012395_040 Hb_000116_050 Hb_000116_050 Hb_012395_040--Hb_000116_050 Hb_001279_110 Hb_001279_110 Hb_012395_040--Hb_001279_110 Hb_005618_070 Hb_005618_070 Hb_012395_040--Hb_005618_070 Hb_001257_070 Hb_001257_070 Hb_012395_040--Hb_001257_070 Hb_000060_030 Hb_000060_030 Hb_012395_040--Hb_000060_030 Hb_005288_090 Hb_005288_090 Hb_012395_040--Hb_005288_090 Hb_000116_050--Hb_000060_030 Hb_000116_050--Hb_001279_110 Hb_009113_060 Hb_009113_060 Hb_000116_050--Hb_009113_060 Hb_001998_180 Hb_001998_180 Hb_000116_050--Hb_001998_180 Hb_002928_150 Hb_002928_150 Hb_000116_050--Hb_002928_150 Hb_001279_110--Hb_000060_030 Hb_119044_040 Hb_119044_040 Hb_001279_110--Hb_119044_040 Hb_003776_050 Hb_003776_050 Hb_001279_110--Hb_003776_050 Hb_001279_110--Hb_002928_150 Hb_001969_120 Hb_001969_120 Hb_005618_070--Hb_001969_120 Hb_005618_070--Hb_001279_110 Hb_005618_070--Hb_002928_150 Hb_001541_140 Hb_001541_140 Hb_005618_070--Hb_001541_140 Hb_005618_070--Hb_005288_090 Hb_034420_010 Hb_034420_010 Hb_001257_070--Hb_034420_010 Hb_001257_070--Hb_005288_090 Hb_008226_050 Hb_008226_050 Hb_001257_070--Hb_008226_050 Hb_001257_070--Hb_005618_070 Hb_072620_010 Hb_072620_010 Hb_001257_070--Hb_072620_010 Hb_000060_030--Hb_001998_180 Hb_000060_030--Hb_003776_050 Hb_000060_030--Hb_002928_150 Hb_000340_550 Hb_000340_550 Hb_005288_090--Hb_000340_550 Hb_005288_090--Hb_000060_030 Hb_005288_090--Hb_000116_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0183044 0.0791354 14.6123 6.67772 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.738327 1.22371

CAGE analysis