Hb_012395_050

Information

Type -
Description -
Location Contig12395: 11924-14102
Sequence    

Annotation

kegg
ID rcu:RCOM_1217920
description hypothetical protein
nr
ID XP_012069896.1
description PREDICTED: uncharacterized protein LOC105632180 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SQV6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1217920 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07254: 11306-13921
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012395_050 0.0 - - PREDICTED: uncharacterized protein LOC105632180 [Jatropha curcas]
2 Hb_155444_010 0.079157535 - - -
3 Hb_179960_010 0.1015222887 - - PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Jatropha curcas]
4 Hb_134014_010 0.1126741904 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
5 Hb_029142_040 0.114404911 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
6 Hb_000997_240 0.1168467024 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA4, putative [Ricinus communis]
7 Hb_000959_130 0.1169381448 - - organic anion transporter, putative [Ricinus communis]
8 Hb_001348_010 0.1174358651 - - PREDICTED: lysM domain-containing GPI-anchored protein 1 [Jatropha curcas]
9 Hb_005000_280 0.1194791265 - - PREDICTED: uncharacterized protein LOC105637905 [Jatropha curcas]
10 Hb_002749_040 0.119766103 - - Ribosomal protein L6 family protein [Theobroma cacao]
11 Hb_002203_020 0.1209519879 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002292_080 0.1225103147 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
13 Hb_001769_070 0.1238797232 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like isoform X1 [Jatropha curcas]
14 Hb_001138_070 0.127331643 - - PREDICTED: D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like [Jatropha curcas]
15 Hb_002518_020 0.1305099409 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
16 Hb_003606_050 0.1345666724 - - PREDICTED: beta-galactosidase 10 [Jatropha curcas]
17 Hb_003540_120 0.1354878577 - - calmodulin binding protein, putative [Ricinus communis]
18 Hb_001178_090 0.1365662254 - - Monodehydroascorbate reductase family protein [Populus trichocarpa]
19 Hb_005333_080 0.1367835703 - - conserved hypothetical protein [Ricinus communis]
20 Hb_158092_040 0.1381030084 - - PREDICTED: uncharacterized protein LOC105647294 [Jatropha curcas]

Gene co-expression network

sample Hb_012395_050 Hb_012395_050 Hb_155444_010 Hb_155444_010 Hb_012395_050--Hb_155444_010 Hb_179960_010 Hb_179960_010 Hb_012395_050--Hb_179960_010 Hb_134014_010 Hb_134014_010 Hb_012395_050--Hb_134014_010 Hb_029142_040 Hb_029142_040 Hb_012395_050--Hb_029142_040 Hb_000997_240 Hb_000997_240 Hb_012395_050--Hb_000997_240 Hb_000959_130 Hb_000959_130 Hb_012395_050--Hb_000959_130 Hb_155444_010--Hb_029142_040 Hb_002518_020 Hb_002518_020 Hb_155444_010--Hb_002518_020 Hb_000645_160 Hb_000645_160 Hb_155444_010--Hb_000645_160 Hb_002749_040 Hb_002749_040 Hb_155444_010--Hb_002749_040 Hb_155444_010--Hb_000997_240 Hb_001178_090 Hb_001178_090 Hb_179960_010--Hb_001178_090 Hb_005784_060 Hb_005784_060 Hb_179960_010--Hb_005784_060 Hb_002203_020 Hb_002203_020 Hb_179960_010--Hb_002203_020 Hb_158092_040 Hb_158092_040 Hb_179960_010--Hb_158092_040 Hb_179960_010--Hb_155444_010 Hb_006615_230 Hb_006615_230 Hb_134014_010--Hb_006615_230 Hb_189003_070 Hb_189003_070 Hb_134014_010--Hb_189003_070 Hb_134014_010--Hb_000959_130 Hb_029223_040 Hb_029223_040 Hb_134014_010--Hb_029223_040 Hb_134014_010--Hb_158092_040 Hb_008021_040 Hb_008021_040 Hb_029142_040--Hb_008021_040 Hb_001138_070 Hb_001138_070 Hb_029142_040--Hb_001138_070 Hb_029142_040--Hb_000645_160 Hb_029142_040--Hb_002518_020 Hb_002999_080 Hb_002999_080 Hb_000997_240--Hb_002999_080 Hb_001348_010 Hb_001348_010 Hb_000997_240--Hb_001348_010 Hb_005000_280 Hb_005000_280 Hb_000997_240--Hb_005000_280 Hb_000997_240--Hb_029142_040 Hb_001404_070 Hb_001404_070 Hb_000959_130--Hb_001404_070 Hb_000959_130--Hb_006615_230 Hb_000574_170 Hb_000574_170 Hb_000959_130--Hb_000574_170 Hb_000959_130--Hb_189003_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.707672 4.40701 11.3008 28.5567 0.354813 0.805684
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.228097 0.179411 0.929556 7.89224 6.71863

CAGE analysis