Hb_012395_130

Information

Type -
Description -
Location Contig12395: 53884-56610
Sequence    

Annotation

kegg
ID dosa:Os03t0139100-00
description Os03g0139100; Similar to Ribosomal Pr 117 (Fragment).
nr
ID NP_001048495.1
description Os02g0814700 [Oryza sativa Japonica Group]
swissprot
ID P49690
description 60S ribosomal protein L23 OS=Arabidopsis thaliana GN=RPL23A PE=2 SV=3
trembl
ID A0A0E0IT77
description Uncharacterized protein OS=Oryza nivara PE=4 SV=1
Gene Ontology
ID GO:0005739
description 60s ribosomal protein l23

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07267: 53946-56603
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012395_130 0.0 - - Os02g0814700 [Oryza sativa Japonica Group]
2 Hb_004754_070 0.0512997627 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
3 Hb_011377_020 0.0680744159 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
4 Hb_001780_050 0.0686804687 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Jatropha curcas]
5 Hb_172221_010 0.0724763079 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
6 Hb_000997_120 0.0764626663 - - 40S ribosomal protein S15E [Hevea brasiliensis]
7 Hb_007120_090 0.0833861597 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
8 Hb_006588_080 0.0848505559 - - hypothetical protein JCGZ_25746 [Jatropha curcas]
9 Hb_000163_130 0.0849654727 - - hypothetical protein CICLE_v10022870mg [Citrus clementina]
10 Hb_002909_130 0.0883845277 - - Uncharacterized protein isoform 1 [Theobroma cacao]
11 Hb_005914_200 0.0888043894 - - PREDICTED: 60S ribosomal protein L23-like isoform X1 [Tarenaya hassleriana]
12 Hb_001085_270 0.0898255037 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
13 Hb_000203_020 0.0907761814 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
14 Hb_004007_180 0.0908338119 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
15 Hb_026398_010 0.0921948504 - - hypothetical protein B456_010G132100 [Gossypium raimondii]
16 Hb_000915_120 0.096576849 - - Peptidylprolyl cis/trans isomerase [Theobroma cacao]
17 Hb_000329_020 0.097749512 - - cytoplasmic ribosomal protein S13 [Panax ginseng]
18 Hb_000599_280 0.0988728588 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
19 Hb_002660_030 0.0995857945 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002838_030 0.1005417343 - - 40S ribosomal protein S25A [Hevea brasiliensis]

Gene co-expression network

sample Hb_012395_130 Hb_012395_130 Hb_004754_070 Hb_004754_070 Hb_012395_130--Hb_004754_070 Hb_011377_020 Hb_011377_020 Hb_012395_130--Hb_011377_020 Hb_001780_050 Hb_001780_050 Hb_012395_130--Hb_001780_050 Hb_172221_010 Hb_172221_010 Hb_012395_130--Hb_172221_010 Hb_000997_120 Hb_000997_120 Hb_012395_130--Hb_000997_120 Hb_007120_090 Hb_007120_090 Hb_012395_130--Hb_007120_090 Hb_004754_070--Hb_001780_050 Hb_005914_200 Hb_005914_200 Hb_004754_070--Hb_005914_200 Hb_000163_130 Hb_000163_130 Hb_004754_070--Hb_000163_130 Hb_004754_070--Hb_011377_020 Hb_004007_180 Hb_004007_180 Hb_004754_070--Hb_004007_180 Hb_000599_280 Hb_000599_280 Hb_011377_020--Hb_000599_280 Hb_006588_080 Hb_006588_080 Hb_011377_020--Hb_006588_080 Hb_011377_020--Hb_001780_050 Hb_011377_020--Hb_004007_180 Hb_001780_050--Hb_000163_130 Hb_001780_050--Hb_005914_200 Hb_000236_150 Hb_000236_150 Hb_001780_050--Hb_000236_150 Hb_012539_020 Hb_012539_020 Hb_001780_050--Hb_012539_020 Hb_000329_020 Hb_000329_020 Hb_172221_010--Hb_000329_020 Hb_000042_260 Hb_000042_260 Hb_172221_010--Hb_000042_260 Hb_026398_010 Hb_026398_010 Hb_172221_010--Hb_026398_010 Hb_002909_130 Hb_002909_130 Hb_172221_010--Hb_002909_130 Hb_002588_010 Hb_002588_010 Hb_172221_010--Hb_002588_010 Hb_000997_120--Hb_007120_090 Hb_002838_030 Hb_002838_030 Hb_000997_120--Hb_002838_030 Hb_004543_040 Hb_004543_040 Hb_000997_120--Hb_004543_040 Hb_004125_110 Hb_004125_110 Hb_000997_120--Hb_004125_110 Hb_027684_020 Hb_027684_020 Hb_000997_120--Hb_027684_020 Hb_001789_050 Hb_001789_050 Hb_007120_090--Hb_001789_050 Hb_007120_090--Hb_002838_030 Hb_000948_220 Hb_000948_220 Hb_007120_090--Hb_000948_220 Hb_000676_160 Hb_000676_160 Hb_007120_090--Hb_000676_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.986 4.77412 12.6849 26.231 13.928 29.2666
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
58.6588 144.228 39.651 33.4687 13.0085

CAGE analysis