Hb_012395_190

Information

Type -
Description -
Location Contig12395: 98380-99983
Sequence    

Annotation

kegg
ID vvi:100241570
description putative pentatricopeptide repeat-containing protein At5g52630
nr
ID KJB28539.1
description hypothetical protein B456_005G053800 [Gossypium raimondii]
swissprot
ID P0C7R1
description Pentatricopeptide repeat-containing protein DWY1, chloroplastic OS=Arabidopsis thaliana GN=DYW1 PE=1 SV=1
trembl
ID A0A0D2R9Q4
description Gossypium raimondii chromosome 5, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_005G053800 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012395_190 0.0 - - hypothetical protein B456_005G053800 [Gossypium raimondii]
2 Hb_000088_010 0.0794388366 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_049675_010 0.1094097724 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
4 Hb_007943_080 0.1112632021 - - PREDICTED: cyclin-dependent kinase F-1 isoform X1 [Jatropha curcas]
5 Hb_000122_130 0.1124440469 - - conserved hypothetical protein [Ricinus communis]
6 Hb_010710_010 0.1128152495 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
7 Hb_000497_140 0.1155939843 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
8 Hb_002890_340 0.1168243377 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
9 Hb_002039_010 0.1181535951 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
10 Hb_000358_080 0.1211469477 - - Ribonuclease 3 [Gossypium arboreum]
11 Hb_002903_110 0.121657296 - - PREDICTED: RNA polymerase-associated protein RTF1 homolog [Jatropha curcas]
12 Hb_000173_400 0.1221242628 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18950 [Jatropha curcas]
13 Hb_000776_110 0.1237662244 - - PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Jatropha curcas]
14 Hb_001771_130 0.123855569 - - PREDICTED: pentatricopeptide repeat-containing protein At2g27610 [Jatropha curcas]
15 Hb_000016_110 0.123992036 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38010 [Jatropha curcas]
16 Hb_001767_090 0.1246173553 - - ankyrin repeat protein [Bruguiera gymnorhiza]
17 Hb_001538_010 0.1255511169 - - -
18 Hb_001936_050 0.1258821213 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210-like [Prunus mume]
19 Hb_000490_030 0.1262832593 - - DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
20 Hb_000608_120 0.127280884 - - PREDICTED: uncharacterized protein LOC105644872 [Jatropha curcas]

Gene co-expression network

sample Hb_012395_190 Hb_012395_190 Hb_000088_010 Hb_000088_010 Hb_012395_190--Hb_000088_010 Hb_049675_010 Hb_049675_010 Hb_012395_190--Hb_049675_010 Hb_007943_080 Hb_007943_080 Hb_012395_190--Hb_007943_080 Hb_000122_130 Hb_000122_130 Hb_012395_190--Hb_000122_130 Hb_010710_010 Hb_010710_010 Hb_012395_190--Hb_010710_010 Hb_000497_140 Hb_000497_140 Hb_012395_190--Hb_000497_140 Hb_000088_010--Hb_007943_080 Hb_002903_110 Hb_002903_110 Hb_000088_010--Hb_002903_110 Hb_000358_080 Hb_000358_080 Hb_000088_010--Hb_000358_080 Hb_006091_030 Hb_006091_030 Hb_000088_010--Hb_006091_030 Hb_003861_080 Hb_003861_080 Hb_000088_010--Hb_003861_080 Hb_049675_010--Hb_000122_130 Hb_010436_020 Hb_010436_020 Hb_049675_010--Hb_010436_020 Hb_012490_040 Hb_012490_040 Hb_049675_010--Hb_012490_040 Hb_034271_030 Hb_034271_030 Hb_049675_010--Hb_034271_030 Hb_002890_340 Hb_002890_340 Hb_049675_010--Hb_002890_340 Hb_005280_010 Hb_005280_010 Hb_049675_010--Hb_005280_010 Hb_007943_080--Hb_000358_080 Hb_000120_050 Hb_000120_050 Hb_007943_080--Hb_000120_050 Hb_007558_140 Hb_007558_140 Hb_007943_080--Hb_007558_140 Hb_007943_080--Hb_003861_080 Hb_098993_010 Hb_098993_010 Hb_007943_080--Hb_098993_010 Hb_000134_350 Hb_000134_350 Hb_007943_080--Hb_000134_350 Hb_000122_130--Hb_010436_020 Hb_000122_130--Hb_012490_040 Hb_000122_130--Hb_002890_340 Hb_000122_130--Hb_005280_010 Hb_000230_080 Hb_000230_080 Hb_010710_010--Hb_000230_080 Hb_000413_180 Hb_000413_180 Hb_010710_010--Hb_000413_180 Hb_003750_080 Hb_003750_080 Hb_010710_010--Hb_003750_080 Hb_002307_100 Hb_002307_100 Hb_010710_010--Hb_002307_100 Hb_000152_820 Hb_000152_820 Hb_010710_010--Hb_000152_820 Hb_001720_050 Hb_001720_050 Hb_010710_010--Hb_001720_050 Hb_000016_110 Hb_000016_110 Hb_000497_140--Hb_000016_110 Hb_005399_010 Hb_005399_010 Hb_000497_140--Hb_005399_010 Hb_000497_140--Hb_006091_030 Hb_000106_040 Hb_000106_040 Hb_000497_140--Hb_000106_040 Hb_000077_130 Hb_000077_130 Hb_000497_140--Hb_000077_130 Hb_000086_590 Hb_000086_590 Hb_000497_140--Hb_000086_590
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.08707 0.905415 0.170878 0.213185 1.60549 3.29804
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.874365 1.00534 2.92516 0.919586 0.551936

CAGE analysis