Hb_012395_220

Information

Type -
Description -
Location Contig12395: 107245-109158
Sequence    

Annotation

kegg
ID pxb:103948720
description pentatricopeptide repeat-containing protein At4g02750-like
nr
ID XP_012077678.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
swissprot
ID Q9SY02
description Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
trembl
ID A0A067KM19
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12869 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07285: 108318-108709
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012395_220 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
2 Hb_012807_050 0.0952939486 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
3 Hb_002813_050 0.095334998 desease resistance Gene Name: TIR_2 PREDICTED: uncharacterized protein LOC105635699 [Jatropha curcas]
4 Hb_000680_050 0.1042338994 - - hypothetical protein JCGZ_24767 [Jatropha curcas]
5 Hb_010172_090 0.1092086993 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_000500_040 0.1102365181 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001141_390 0.1111179882 - - PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
8 Hb_031042_020 0.1123597062 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g47460 [Jatropha curcas]
9 Hb_011161_010 0.1124006366 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 isoform X1 [Jatropha curcas]
10 Hb_006573_200 0.1141187343 - - PREDICTED: pentatricopeptide repeat-containing protein At5g52850, chloroplastic [Jatropha curcas]
11 Hb_004129_130 0.1151125886 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_005843_100 0.1157560323 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39350-like [Jatropha curcas]
13 Hb_005015_070 0.1160905255 - - PREDICTED: pentatricopeptide repeat-containing protein At4g39530 [Jatropha curcas]
14 Hb_000175_450 0.1176365004 - - PREDICTED: pentatricopeptide repeat-containing protein At1g52620 [Jatropha curcas]
15 Hb_006316_040 0.1187983992 - - PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Jatropha curcas]
16 Hb_001049_030 0.1193453567 - - catalytic, putative [Ricinus communis]
17 Hb_029584_130 0.1221557164 - - PREDICTED: uncharacterized protein LOC105637865 [Jatropha curcas]
18 Hb_001318_030 0.1227585523 - - PREDICTED: uncharacterized protein LOC105642686 [Jatropha curcas]
19 Hb_000953_010 0.1231929421 - - hypothetical protein CISIN_1g0425012mg, partial [Citrus sinensis]
20 Hb_000229_020 0.1244262578 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03540 [Jatropha curcas]

Gene co-expression network

sample Hb_012395_220 Hb_012395_220 Hb_012807_050 Hb_012807_050 Hb_012395_220--Hb_012807_050 Hb_002813_050 Hb_002813_050 Hb_012395_220--Hb_002813_050 Hb_000680_050 Hb_000680_050 Hb_012395_220--Hb_000680_050 Hb_010172_090 Hb_010172_090 Hb_012395_220--Hb_010172_090 Hb_000500_040 Hb_000500_040 Hb_012395_220--Hb_000500_040 Hb_001141_390 Hb_001141_390 Hb_012395_220--Hb_001141_390 Hb_004785_060 Hb_004785_060 Hb_012807_050--Hb_004785_060 Hb_000229_020 Hb_000229_020 Hb_012807_050--Hb_000229_020 Hb_012807_050--Hb_010172_090 Hb_076693_020 Hb_076693_020 Hb_012807_050--Hb_076693_020 Hb_000000_370 Hb_000000_370 Hb_012807_050--Hb_000000_370 Hb_004767_050 Hb_004767_050 Hb_012807_050--Hb_004767_050 Hb_002813_050--Hb_000000_370 Hb_000859_060 Hb_000859_060 Hb_002813_050--Hb_000859_060 Hb_002813_050--Hb_004785_060 Hb_002813_050--Hb_001141_390 Hb_002813_050--Hb_012807_050 Hb_168697_010 Hb_168697_010 Hb_000680_050--Hb_168697_010 Hb_000680_050--Hb_001141_390 Hb_048219_010 Hb_048219_010 Hb_000680_050--Hb_048219_010 Hb_000680_050--Hb_002813_050 Hb_005015_070 Hb_005015_070 Hb_000680_050--Hb_005015_070 Hb_010172_090--Hb_000229_020 Hb_006316_040 Hb_006316_040 Hb_010172_090--Hb_006316_040 Hb_008500_010 Hb_008500_010 Hb_010172_090--Hb_008500_010 Hb_001584_150 Hb_001584_150 Hb_010172_090--Hb_001584_150 Hb_010172_090--Hb_004767_050 Hb_000175_450 Hb_000175_450 Hb_000500_040--Hb_000175_450 Hb_001274_020 Hb_001274_020 Hb_000500_040--Hb_001274_020 Hb_000056_100 Hb_000056_100 Hb_000500_040--Hb_000056_100 Hb_002026_100 Hb_002026_100 Hb_000500_040--Hb_002026_100 Hb_000953_010 Hb_000953_010 Hb_000500_040--Hb_000953_010 Hb_000836_360 Hb_000836_360 Hb_000500_040--Hb_000836_360 Hb_000204_210 Hb_000204_210 Hb_001141_390--Hb_000204_210 Hb_002374_310 Hb_002374_310 Hb_001141_390--Hb_002374_310 Hb_001141_390--Hb_048219_010 Hb_001141_390--Hb_005015_070 Hb_001141_390--Hb_001584_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.71081 2.07103 0.421436 0.41534 0.950044 1.74007
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.663566 1.47308 2.18964 0.675368 0.314837

CAGE analysis