Hb_012395_250

Information

Type -
Description -
Location Contig12395: 123888-125255
Sequence    

Annotation

kegg
ID rcu:RCOM_1217340
description hypothetical protein
nr
ID XP_002528347.1
description hypothetical protein RCOM_1217340 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SQS8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1217340 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012395_250 0.0 - - hypothetical protein RCOM_1217340 [Ricinus communis]
2 Hb_000093_010 0.1127237354 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
3 Hb_028514_010 0.1177310984 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]
4 Hb_000327_320 0.1219583532 - - PREDICTED: probable receptor-like protein kinase At2g39360 [Jatropha curcas]
5 Hb_000645_080 0.123042517 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
6 Hb_003607_080 0.1252270885 - - PREDICTED: putative kinase-like protein TMKL1 [Jatropha curcas]
7 Hb_001216_060 0.1252360342 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001418_050 0.1301073555 - - PREDICTED: uncharacterized protein LOC105631088 [Jatropha curcas]
9 Hb_002388_070 0.1333605168 - - ring finger protein, putative [Ricinus communis]
10 Hb_000087_190 0.1337130503 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]
11 Hb_001688_030 0.1341600865 - - hypothetical protein JCGZ_10716 [Jatropha curcas]
12 Hb_135757_030 0.1342071504 - - PREDICTED: actin-depolymerizing factor 5 [Jatropha curcas]
13 Hb_021596_050 0.134453424 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005215_050 0.1344651485 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g37250 [Jatropha curcas]
15 Hb_000206_270 0.1362961452 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
16 Hb_013399_060 0.1381526678 - - PREDICTED: uncharacterized protein LOC105133408 [Populus euphratica]
17 Hb_000098_230 0.1384109349 - - Potassium channel AKT2/3, putative [Ricinus communis]
18 Hb_000449_070 0.1390100149 - - unnamed protein product [Vitis vinifera]
19 Hb_009421_060 0.1395751448 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
20 Hb_000847_110 0.1400440344 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_012395_250 Hb_012395_250 Hb_000093_010 Hb_000093_010 Hb_012395_250--Hb_000093_010 Hb_028514_010 Hb_028514_010 Hb_012395_250--Hb_028514_010 Hb_000327_320 Hb_000327_320 Hb_012395_250--Hb_000327_320 Hb_000645_080 Hb_000645_080 Hb_012395_250--Hb_000645_080 Hb_003607_080 Hb_003607_080 Hb_012395_250--Hb_003607_080 Hb_001216_060 Hb_001216_060 Hb_012395_250--Hb_001216_060 Hb_000093_010--Hb_003607_080 Hb_003466_010 Hb_003466_010 Hb_000093_010--Hb_003466_010 Hb_005648_020 Hb_005648_020 Hb_000093_010--Hb_005648_020 Hb_008021_050 Hb_008021_050 Hb_000093_010--Hb_008021_050 Hb_000395_310 Hb_000395_310 Hb_000093_010--Hb_000395_310 Hb_001688_030 Hb_001688_030 Hb_000093_010--Hb_001688_030 Hb_002997_150 Hb_002997_150 Hb_028514_010--Hb_002997_150 Hb_006153_140 Hb_006153_140 Hb_028514_010--Hb_006153_140 Hb_009079_020 Hb_009079_020 Hb_028514_010--Hb_009079_020 Hb_002388_070 Hb_002388_070 Hb_028514_010--Hb_002388_070 Hb_004020_030 Hb_004020_030 Hb_028514_010--Hb_004020_030 Hb_135757_030 Hb_135757_030 Hb_028514_010--Hb_135757_030 Hb_000087_190 Hb_000087_190 Hb_000327_320--Hb_000087_190 Hb_001369_190 Hb_001369_190 Hb_000327_320--Hb_001369_190 Hb_007101_070 Hb_007101_070 Hb_000327_320--Hb_007101_070 Hb_000327_320--Hb_002388_070 Hb_010337_040 Hb_010337_040 Hb_000327_320--Hb_010337_040 Hb_012787_020 Hb_012787_020 Hb_000645_080--Hb_012787_020 Hb_000362_030 Hb_000362_030 Hb_000645_080--Hb_000362_030 Hb_000521_060 Hb_000521_060 Hb_000645_080--Hb_000521_060 Hb_000645_080--Hb_028514_010 Hb_017914_020 Hb_017914_020 Hb_000645_080--Hb_017914_020 Hb_000991_060 Hb_000991_060 Hb_000645_080--Hb_000991_060 Hb_003607_080--Hb_008021_050 Hb_003607_080--Hb_005648_020 Hb_005215_050 Hb_005215_050 Hb_003607_080--Hb_005215_050 Hb_170077_020 Hb_170077_020 Hb_003607_080--Hb_170077_020 Hb_003607_080--Hb_003466_010 Hb_000011_250 Hb_000011_250 Hb_001216_060--Hb_000011_250 Hb_013399_060 Hb_013399_060 Hb_001216_060--Hb_013399_060 Hb_003598_050 Hb_003598_050 Hb_001216_060--Hb_003598_050 Hb_001216_060--Hb_000645_080 Hb_009421_060 Hb_009421_060 Hb_001216_060--Hb_009421_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0152388 0.146619 0.18732 1.37245 0.0285472 0.0155317
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0273369 0 0.0546325 0.284785

CAGE analysis