Hb_012398_020

Information

Type -
Description -
Location Contig12398: 8373-9254
Sequence    

Annotation

kegg
ID rcu:RCOM_0641040
description hypothetical protein
nr
ID XP_002521922.1
description hypothetical protein RCOM_0641040 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S7F3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0641040 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012398_020 0.0 - - hypothetical protein RCOM_0641040 [Ricinus communis]
2 Hb_004557_020 0.0002531045 - - PREDICTED: L-type lectin-domain containing receptor kinase V.9-like [Jatropha curcas]
3 Hb_013093_010 0.0008521537 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
4 Hb_029613_010 0.0014370856 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_003007_020 0.0017723506 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
6 Hb_034691_020 0.0023456704 - - 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis]
7 Hb_000383_040 0.0024594086 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
8 Hb_000612_060 0.0025798867 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
9 Hb_003608_020 0.002941784 - - hypothetical protein CISIN_1g041945mg [Citrus sinensis]
10 Hb_004870_030 0.0054019188 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_011994_050 0.0066341816 - - multicopper oxidase, putative [Ricinus communis]
12 Hb_001060_130 0.008482483 - - -
13 Hb_000977_230 0.0118483228 - - FT-like protein [Betula luminifera]
14 Hb_005271_210 0.0124426514 - - hypothetical protein JCGZ_20628 [Jatropha curcas]
15 Hb_007926_030 0.0146162814 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP13-like [Populus euphratica]
16 Hb_184798_050 0.0153553659 - - -
17 Hb_002818_140 0.0157018783 - - conserved hypothetical protein [Ricinus communis]
18 Hb_012758_010 0.0157731887 - - PREDICTED: flowering-promoting factor 1-like protein 2 [Jatropha curcas]
19 Hb_147503_020 0.0194459821 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
20 Hb_006332_050 0.0199519733 - - hypothetical protein POPTR_0005s07570g [Populus trichocarpa]

Gene co-expression network

sample Hb_012398_020 Hb_012398_020 Hb_004557_020 Hb_004557_020 Hb_012398_020--Hb_004557_020 Hb_013093_010 Hb_013093_010 Hb_012398_020--Hb_013093_010 Hb_029613_010 Hb_029613_010 Hb_012398_020--Hb_029613_010 Hb_003007_020 Hb_003007_020 Hb_012398_020--Hb_003007_020 Hb_034691_020 Hb_034691_020 Hb_012398_020--Hb_034691_020 Hb_000383_040 Hb_000383_040 Hb_012398_020--Hb_000383_040 Hb_004557_020--Hb_013093_010 Hb_004557_020--Hb_003007_020 Hb_004557_020--Hb_029613_010 Hb_004557_020--Hb_034691_020 Hb_003608_020 Hb_003608_020 Hb_004557_020--Hb_003608_020 Hb_013093_010--Hb_029613_010 Hb_013093_010--Hb_000383_040 Hb_000612_060 Hb_000612_060 Hb_013093_010--Hb_000612_060 Hb_013093_010--Hb_003007_020 Hb_029613_010--Hb_000383_040 Hb_029613_010--Hb_000612_060 Hb_029613_010--Hb_003007_020 Hb_003007_020--Hb_034691_020 Hb_003007_020--Hb_003608_020 Hb_034691_020--Hb_003608_020 Hb_034691_020--Hb_013093_010 Hb_034691_020--Hb_029613_010 Hb_000383_040--Hb_000612_060 Hb_000383_040--Hb_004557_020 Hb_004870_030 Hb_004870_030 Hb_000383_040--Hb_004870_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0194346 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0946319

CAGE analysis