Hb_012400_020

Information

Type -
Description -
Location Contig12400: 30013-31257
Sequence    

Annotation

kegg
ID rcu:RCOM_0419140
description Spotted leaf protein, putative
nr
ID XP_002524056.1
description Spotted leaf protein, putative [Ricinus communis]
swissprot
ID Q84TG3
description E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana GN=PUB23 PE=1 SV=1
trembl
ID B9SDI7
description Spotted leaf protein, putative OS=Ricinus communis GN=RCOM_0419110 PE=4 SV=1
Gene Ontology
ID GO:0004842
description e3 ubiquitin-protein ligase pub23-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07303: 29918-30192 , PASA_asmbl_07304: 30252-30667
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012400_020 0.0 - - Spotted leaf protein, putative [Ricinus communis]
2 Hb_000592_070 0.0797778036 - - PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]
3 Hb_009252_090 0.0910582191 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
4 Hb_021142_030 0.0957377943 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
5 Hb_046610_010 0.103956108 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_000997_130 0.1040460712 - - DNA binding protein, putative [Ricinus communis]
7 Hb_002133_010 0.1042965023 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
8 Hb_100395_010 0.1089082445 - - ankyrin repeat-containing protein, putative [Ricinus communis]
9 Hb_009385_010 0.1099786483 - - Cysteine/Histidine-rich C1 domain family protein, putative [Theobroma cacao]
10 Hb_000069_530 0.1112984626 transcription factor TF Family: WRKY hypothetical protein POPTR_0014s09190g [Populus trichocarpa]
11 Hb_001410_040 0.1135295422 - - Protein ABIL2, putative [Ricinus communis]
12 Hb_007747_070 0.1146634881 - - PREDICTED: casparian strip membrane protein 1-like [Jatropha curcas]
13 Hb_007894_040 0.1150656195 - - PREDICTED: NEP1-interacting protein 1 isoform X1 [Jatropha curcas]
14 Hb_000192_030 0.1165366933 - - PREDICTED: TATA-box-binding protein 2 isoform X1 [Setaria italica]
15 Hb_010223_010 0.1212875277 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
16 Hb_006083_010 0.1220306057 transcription factor TF Family: B3 DNA binding protein, putative [Ricinus communis]
17 Hb_003847_090 0.1247494218 - - PREDICTED: tyrosine decarboxylase 1-like [Jatropha curcas]
18 Hb_012146_010 0.128976136 - - PREDICTED: uncharacterized protein LOC105111251 [Populus euphratica]
19 Hb_004788_030 0.1303539838 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X1 [Jatropha curcas]
20 Hb_164577_010 0.1332558647 - - hypothetical protein JCGZ_26658 [Jatropha curcas]

Gene co-expression network

sample Hb_012400_020 Hb_012400_020 Hb_000592_070 Hb_000592_070 Hb_012400_020--Hb_000592_070 Hb_009252_090 Hb_009252_090 Hb_012400_020--Hb_009252_090 Hb_021142_030 Hb_021142_030 Hb_012400_020--Hb_021142_030 Hb_046610_010 Hb_046610_010 Hb_012400_020--Hb_046610_010 Hb_000997_130 Hb_000997_130 Hb_012400_020--Hb_000997_130 Hb_002133_010 Hb_002133_010 Hb_012400_020--Hb_002133_010 Hb_000592_070--Hb_002133_010 Hb_000592_070--Hb_009252_090 Hb_000069_530 Hb_000069_530 Hb_000592_070--Hb_000069_530 Hb_031266_020 Hb_031266_020 Hb_000592_070--Hb_031266_020 Hb_003060_150 Hb_003060_150 Hb_000592_070--Hb_003060_150 Hb_009252_090--Hb_000069_530 Hb_009252_090--Hb_003060_150 Hb_004551_010 Hb_004551_010 Hb_009252_090--Hb_004551_010 Hb_009252_090--Hb_031266_020 Hb_009385_010 Hb_009385_010 Hb_021142_030--Hb_009385_010 Hb_007747_070 Hb_007747_070 Hb_021142_030--Hb_007747_070 Hb_001410_040 Hb_001410_040 Hb_021142_030--Hb_001410_040 Hb_007894_040 Hb_007894_040 Hb_021142_030--Hb_007894_040 Hb_004788_030 Hb_004788_030 Hb_021142_030--Hb_004788_030 Hb_008821_030 Hb_008821_030 Hb_021142_030--Hb_008821_030 Hb_054165_010 Hb_054165_010 Hb_046610_010--Hb_054165_010 Hb_164577_010 Hb_164577_010 Hb_046610_010--Hb_164577_010 Hb_046610_010--Hb_000997_130 Hb_001002_020 Hb_001002_020 Hb_046610_010--Hb_001002_020 Hb_007546_010 Hb_007546_010 Hb_046610_010--Hb_007546_010 Hb_046610_010--Hb_021142_030 Hb_002289_180 Hb_002289_180 Hb_000997_130--Hb_002289_180 Hb_000997_130--Hb_164577_010 Hb_000997_130--Hb_007546_010 Hb_000164_160 Hb_000164_160 Hb_000997_130--Hb_000164_160 Hb_010223_010 Hb_010223_010 Hb_000997_130--Hb_010223_010 Hb_002133_010--Hb_000997_130 Hb_002133_010--Hb_164577_010 Hb_002133_010--Hb_000069_530 Hb_002133_010--Hb_009252_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 24.0069 41.7985 14.4639 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0305437 0.113849 0.0489093 0.823406

CAGE analysis