Hb_012404_020

Information

Type -
Description -
Location Contig12404: 23382-27141
Sequence    

Annotation

kegg
ID rcu:RCOM_0384750
description hypothetical protein
nr
ID XP_002528600.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SRI1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0384750 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07305: 23708-23826 , PASA_asmbl_07306: 26591-27391
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012404_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_070498_010 0.0808723966 - - receptor kinase, putative [Ricinus communis]
3 Hb_002301_400 0.0817585522 - - structural constituent of cell wall, putative [Ricinus communis]
4 Hb_128196_010 0.0867007627 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005730_110 0.087332262 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
6 Hb_001366_290 0.0959291986 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
7 Hb_028008_040 0.0972657614 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000005_360 0.0972741774 - - conserved hypothetical protein [Ricinus communis]
9 Hb_011918_070 0.1007215985 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
10 Hb_002490_060 0.1030820131 - - PREDICTED: uncharacterized protein LOC105638743 [Jatropha curcas]
11 Hb_001157_050 0.1045139476 - - cation efflux protein/ zinc transporter, putative [Ricinus communis]
12 Hb_039075_020 0.1079849731 - - PREDICTED: uncharacterized protein LOC103331245 [Prunus mume]
13 Hb_006196_030 0.1080933462 - - PREDICTED: uncharacterized protein LOC105650679 [Jatropha curcas]
14 Hb_001054_040 0.109706996 - - hypothetical protein JCGZ_25310 [Jatropha curcas]
15 Hb_026240_020 0.1101148126 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g59780 [Jatropha curcas]
16 Hb_000996_030 0.110333573 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g63430 isoform X1 [Jatropha curcas]
17 Hb_000996_070 0.1105659135 - - unnamed protein product [Vitis vinifera]
18 Hb_021576_130 0.1109264583 - - PREDICTED: chorismate mutase 2 isoform X1 [Jatropha curcas]
19 Hb_001794_040 0.1112142569 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
20 Hb_015048_020 0.1119995939 - - PREDICTED: myb-like protein D [Jatropha curcas]

Gene co-expression network

sample Hb_012404_020 Hb_012404_020 Hb_070498_010 Hb_070498_010 Hb_012404_020--Hb_070498_010 Hb_002301_400 Hb_002301_400 Hb_012404_020--Hb_002301_400 Hb_128196_010 Hb_128196_010 Hb_012404_020--Hb_128196_010 Hb_005730_110 Hb_005730_110 Hb_012404_020--Hb_005730_110 Hb_001366_290 Hb_001366_290 Hb_012404_020--Hb_001366_290 Hb_028008_040 Hb_028008_040 Hb_012404_020--Hb_028008_040 Hb_070498_010--Hb_128196_010 Hb_070498_010--Hb_002301_400 Hb_000996_030 Hb_000996_030 Hb_070498_010--Hb_000996_030 Hb_011918_070 Hb_011918_070 Hb_070498_010--Hb_011918_070 Hb_000003_750 Hb_000003_750 Hb_070498_010--Hb_000003_750 Hb_002301_400--Hb_128196_010 Hb_001159_090 Hb_001159_090 Hb_002301_400--Hb_001159_090 Hb_006196_030 Hb_006196_030 Hb_002301_400--Hb_006196_030 Hb_001195_550 Hb_001195_550 Hb_002301_400--Hb_001195_550 Hb_001157_050 Hb_001157_050 Hb_128196_010--Hb_001157_050 Hb_001221_060 Hb_001221_060 Hb_128196_010--Hb_001221_060 Hb_005568_020 Hb_005568_020 Hb_128196_010--Hb_005568_020 Hb_000627_040 Hb_000627_040 Hb_005730_110--Hb_000627_040 Hb_026240_020 Hb_026240_020 Hb_005730_110--Hb_026240_020 Hb_000418_170 Hb_000418_170 Hb_005730_110--Hb_000418_170 Hb_022092_110 Hb_022092_110 Hb_005730_110--Hb_022092_110 Hb_004592_010 Hb_004592_010 Hb_005730_110--Hb_004592_010 Hb_002490_060 Hb_002490_060 Hb_001366_290--Hb_002490_060 Hb_001366_290--Hb_001157_050 Hb_039075_020 Hb_039075_020 Hb_001366_290--Hb_039075_020 Hb_001366_290--Hb_000627_040 Hb_015048_020 Hb_015048_020 Hb_001366_290--Hb_015048_020 Hb_007290_050 Hb_007290_050 Hb_001366_290--Hb_007290_050 Hb_003580_050 Hb_003580_050 Hb_028008_040--Hb_003580_050 Hb_002078_390 Hb_002078_390 Hb_028008_040--Hb_002078_390 Hb_004696_010 Hb_004696_010 Hb_028008_040--Hb_004696_010 Hb_001936_190 Hb_001936_190 Hb_028008_040--Hb_001936_190 Hb_005365_010 Hb_005365_010 Hb_028008_040--Hb_005365_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.103468 1.34431 4.87988 5.40861 0.125617 0.0213715
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.861825 2.79817

CAGE analysis