Hb_012404_050

Information

Type -
Description -
Location Contig12404: 93289-96319
Sequence    

Annotation

kegg
ID cam:101511883
description genome polyprotein-like
nr
ID XP_012568598.1
description PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
swissprot
ID Q91DM0
description Genome polyprotein OS=Petunia vein clearing virus (isolate Shepherd) PE=3 SV=1
trembl
ID V9QEC8
description Polyprotein OS=Citrus endogenous pararetrovirus PE=4 SV=1
Gene Ontology
ID GO:0003676
description polyprotein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012404_050 0.0 - - PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
2 Hb_000110_330 0.0827116933 - - PREDICTED: probable nitrite transporter At1g68570-like [Glycine max]
3 Hb_055147_010 0.0972527091 - - thioredoxin H-type 7 [Hevea brasiliensis]
4 Hb_012545_080 0.1105593701 - - PREDICTED: uncharacterized protein LOC105633680 [Jatropha curcas]
5 Hb_133845_010 0.118734989 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
6 Hb_007407_010 0.1229181551 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 74 [Populus euphratica]
7 Hb_004785_120 0.1273806101 - - Receptor protein kinase 1 [Theobroma cacao]
8 Hb_043522_010 0.1279047738 - - -
9 Hb_006395_020 0.1290800167 - - hypothetical protein RCOM_0725510 [Ricinus communis]
10 Hb_005357_270 0.1316050347 - - Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor, putative [Ricinus communis]
11 Hb_000996_200 0.1375690065 - - PREDICTED: (+)-neomenthol dehydrogenase-like [Populus euphratica]
12 Hb_041145_010 0.1393201987 - - hypothetical protein CISIN_1g021653mg [Citrus sinensis]
13 Hb_002471_190 0.1464157425 - - PREDICTED: U-box domain-containing protein 21-like [Jatropha curcas]
14 Hb_018043_010 0.1534673538 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
15 Hb_158111_010 0.1537899444 - - S-locus-specific glycoprotein precursor, putative [Ricinus communis]
16 Hb_001141_200 0.1551818708 - - PREDICTED: LOW QUALITY PROTEIN: parafibromin [Prunus mume]
17 Hb_000133_060 0.1559207491 - - PREDICTED: protein YLS9-like [Jatropha curcas]
18 Hb_000302_150 0.1559336459 transcription factor TF Family: WRKY hypothetical protein RCOM_1581940 [Ricinus communis]
19 Hb_001635_230 0.1581073502 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
20 Hb_002615_010 0.1583076195 - - Uncharacterized protein TCM_040942 [Theobroma cacao]

Gene co-expression network

sample Hb_012404_050 Hb_012404_050 Hb_000110_330 Hb_000110_330 Hb_012404_050--Hb_000110_330 Hb_055147_010 Hb_055147_010 Hb_012404_050--Hb_055147_010 Hb_012545_080 Hb_012545_080 Hb_012404_050--Hb_012545_080 Hb_133845_010 Hb_133845_010 Hb_012404_050--Hb_133845_010 Hb_007407_010 Hb_007407_010 Hb_012404_050--Hb_007407_010 Hb_004785_120 Hb_004785_120 Hb_012404_050--Hb_004785_120 Hb_041145_010 Hb_041145_010 Hb_000110_330--Hb_041145_010 Hb_000110_330--Hb_012545_080 Hb_000110_330--Hb_007407_010 Hb_005357_270 Hb_005357_270 Hb_000110_330--Hb_005357_270 Hb_000133_060 Hb_000133_060 Hb_000110_330--Hb_000133_060 Hb_055147_010--Hb_004785_120 Hb_000720_110 Hb_000720_110 Hb_055147_010--Hb_000720_110 Hb_000996_200 Hb_000996_200 Hb_055147_010--Hb_000996_200 Hb_055147_010--Hb_000110_330 Hb_000862_060 Hb_000862_060 Hb_055147_010--Hb_000862_060 Hb_012545_080--Hb_000996_200 Hb_012545_080--Hb_005357_270 Hb_009683_010 Hb_009683_010 Hb_012545_080--Hb_009683_010 Hb_012545_080--Hb_007407_010 Hb_018043_010 Hb_018043_010 Hb_133845_010--Hb_018043_010 Hb_133845_010--Hb_000110_330 Hb_133845_010--Hb_007407_010 Hb_133845_010--Hb_000133_060 Hb_133845_010--Hb_041145_010 Hb_007407_010--Hb_000133_060 Hb_005605_030 Hb_005605_030 Hb_007407_010--Hb_005605_030 Hb_002205_260 Hb_002205_260 Hb_007407_010--Hb_002205_260 Hb_007407_010--Hb_009683_010 Hb_001021_110 Hb_001021_110 Hb_004785_120--Hb_001021_110 Hb_004785_120--Hb_000996_200 Hb_004785_120--Hb_012545_080 Hb_004785_120--Hb_000110_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0252767 0.0132841 0.00645727 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00603816 0

CAGE analysis