Hb_012410_010

Information

Type -
Description -
Location Contig12410: 402-6313
Sequence    

Annotation

kegg
ID rcu:RCOM_0174470
description hypothetical protein
nr
ID AAO37645.1
description NBS-LRR resistance protein RGH1 [Manihot esculenta]
swissprot
ID Q7XBQ9
description Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1
trembl
ID Q84XG0
description NBS-LRR resistance protein RGH1 OS=Manihot esculenta PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012410_010 0.0 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
2 Hb_155666_010 0.1266291013 - - hypothetical protein JCGZ_01214 [Jatropha curcas]
3 Hb_022693_090 0.1412807055 - - glycosyltransferase, putative [Ricinus communis]
4 Hb_004625_020 0.1470569986 - - PREDICTED: nucleobase-ascorbate transporter 4 [Jatropha curcas]
5 Hb_152914_010 0.1496316603 - - PREDICTED: polcalcin Syr v 3-like [Nicotiana sylvestris]
6 Hb_000453_290 0.1527020446 - - PREDICTED: dr1-associated corepressor-like [Jatropha curcas]
7 Hb_000367_320 0.1555849908 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003582_030 0.1587882446 - - PREDICTED: serine/threonine-protein kinase BRI1-like 2 [Jatropha curcas]
9 Hb_000137_050 0.1595561101 - - conserved hypothetical protein [Ricinus communis]
10 Hb_009225_070 0.1601104841 - - tonoplast intrinsic protein, putative [Ricinus communis]
11 Hb_154038_040 0.1618832361 - - nutrient reservoir, putative [Ricinus communis]
12 Hb_000087_190 0.1628798547 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]
13 Hb_007101_070 0.163583691 - - PREDICTED: serine/threonine-protein kinase PBS1 [Jatropha curcas]
14 Hb_002000_100 0.1649930052 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming]-like [Jatropha curcas]
15 Hb_001360_020 0.1651894608 - - PREDICTED: S-adenosylmethionine synthase 1 [Nelumbo nucifera]
16 Hb_002384_030 0.1655975274 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000028_550 0.1657786273 - - unknown [Medicago truncatula]
18 Hb_004117_020 0.1665503793 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000816_150 0.167750484 - - oligopeptide transporter, putative [Ricinus communis]
20 Hb_001855_020 0.1700430573 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_012410_010 Hb_012410_010 Hb_155666_010 Hb_155666_010 Hb_012410_010--Hb_155666_010 Hb_022693_090 Hb_022693_090 Hb_012410_010--Hb_022693_090 Hb_004625_020 Hb_004625_020 Hb_012410_010--Hb_004625_020 Hb_152914_010 Hb_152914_010 Hb_012410_010--Hb_152914_010 Hb_000453_290 Hb_000453_290 Hb_012410_010--Hb_000453_290 Hb_000367_320 Hb_000367_320 Hb_012410_010--Hb_000367_320 Hb_004117_020 Hb_004117_020 Hb_155666_010--Hb_004117_020 Hb_001410_080 Hb_001410_080 Hb_155666_010--Hb_001410_080 Hb_141194_020 Hb_141194_020 Hb_155666_010--Hb_141194_020 Hb_002391_240 Hb_002391_240 Hb_155666_010--Hb_002391_240 Hb_002370_050 Hb_002370_050 Hb_155666_010--Hb_002370_050 Hb_022693_090--Hb_000453_290 Hb_002384_030 Hb_002384_030 Hb_022693_090--Hb_002384_030 Hb_009225_070 Hb_009225_070 Hb_022693_090--Hb_009225_070 Hb_001360_020 Hb_001360_020 Hb_022693_090--Hb_001360_020 Hb_011314_010 Hb_011314_010 Hb_022693_090--Hb_011314_010 Hb_002592_070 Hb_002592_070 Hb_022693_090--Hb_002592_070 Hb_002171_050 Hb_002171_050 Hb_004625_020--Hb_002171_050 Hb_133492_010 Hb_133492_010 Hb_004625_020--Hb_133492_010 Hb_180980_010 Hb_180980_010 Hb_004625_020--Hb_180980_010 Hb_005183_070 Hb_005183_070 Hb_004625_020--Hb_005183_070 Hb_142056_010 Hb_142056_010 Hb_004625_020--Hb_142056_010 Hb_000137_050 Hb_000137_050 Hb_004625_020--Hb_000137_050 Hb_000197_260 Hb_000197_260 Hb_152914_010--Hb_000197_260 Hb_152914_010--Hb_000137_050 Hb_007579_030 Hb_007579_030 Hb_152914_010--Hb_007579_030 Hb_000000_260 Hb_000000_260 Hb_152914_010--Hb_000000_260 Hb_002186_110 Hb_002186_110 Hb_152914_010--Hb_002186_110 Hb_152914_010--Hb_180980_010 Hb_000453_290--Hb_002592_070 Hb_000468_050 Hb_000468_050 Hb_000453_290--Hb_000468_050 Hb_002000_100 Hb_002000_100 Hb_000453_290--Hb_002000_100 Hb_027405_010 Hb_027405_010 Hb_000453_290--Hb_027405_010 Hb_000453_290--Hb_001360_020 Hb_003126_120 Hb_003126_120 Hb_000367_320--Hb_003126_120 Hb_005736_110 Hb_005736_110 Hb_000367_320--Hb_005736_110 Hb_034688_030 Hb_034688_030 Hb_000367_320--Hb_034688_030 Hb_000367_320--Hb_002000_100 Hb_000367_320--Hb_022693_090 Hb_000367_320--Hb_001360_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.149782 0.0672233 0.614945 0.0444149 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0661105 0.155639

CAGE analysis