Hb_012423_020

Information

Type -
Description -
Location Contig12423: 38346-38769
Sequence    

Annotation

kegg
ID pop:POPTR_0001s08220g
description hypothetical protein
nr
ID KDP25574.1
description hypothetical protein JCGZ_20730 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K1A5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20730 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07367: 38360-38961
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012423_020 0.0 - - hypothetical protein JCGZ_20730 [Jatropha curcas]
2 Hb_000796_200 0.1054652192 - - PREDICTED: probable glycerol-3-phosphate acyltransferase 3 [Jatropha curcas]
3 Hb_009247_020 0.1273075794 - - hypothetical protein JCGZ_04985 [Jatropha curcas]
4 Hb_136027_010 0.1369791406 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_26658 [Jatropha curcas]
5 Hb_000506_140 0.1385967842 - - hypothetical protein PRUPE_ppb019425mg [Prunus persica]
6 Hb_016404_010 0.1402253222 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
7 Hb_000563_460 0.1540411704 - - PREDICTED: RING-H2 finger protein ATL2 [Jatropha curcas]
8 Hb_002973_040 0.1566787697 - - hypothetical protein CICLE_v10020565mg [Citrus clementina]
9 Hb_083862_010 0.1570549696 - - hypothetical protein JCGZ_17956 [Jatropha curcas]
10 Hb_003375_080 0.1578879066 - - PREDICTED: uncharacterized protein LOC105643382 isoform X1 [Jatropha curcas]
11 Hb_001511_270 0.1631646112 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]
12 Hb_002311_490 0.1685339289 - - PREDICTED: RING-H2 finger protein ATL2 [Jatropha curcas]
13 Hb_000347_360 0.1708526472 - - PREDICTED: linoleate 13S-lipoxygenase 3-1, chloroplastic [Jatropha curcas]
14 Hb_002849_030 0.1709643533 transcription factor TF Family: WRKY hypothetical protein POPTR_0014s09190g [Populus trichocarpa]
15 Hb_000087_180 0.1714653229 - - conserved hypothetical protein [Ricinus communis]
16 Hb_073870_020 0.1725338451 - - PREDICTED: probable receptor-like protein kinase At1g67000, partial [Jatropha curcas]
17 Hb_006911_060 0.1744146208 - - hypothetical protein CISIN_1g000594mg [Citrus sinensis]
18 Hb_004242_160 0.1756254476 transcription factor TF Family: GRAS PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1 [Jatropha curcas]
19 Hb_001956_160 0.1774482495 - - hypothetical protein L484_009438 [Morus notabilis]
20 Hb_013607_010 0.1782637359 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA3 [Jatropha curcas]

Gene co-expression network

sample Hb_012423_020 Hb_012423_020 Hb_000796_200 Hb_000796_200 Hb_012423_020--Hb_000796_200 Hb_009247_020 Hb_009247_020 Hb_012423_020--Hb_009247_020 Hb_136027_010 Hb_136027_010 Hb_012423_020--Hb_136027_010 Hb_000506_140 Hb_000506_140 Hb_012423_020--Hb_000506_140 Hb_016404_010 Hb_016404_010 Hb_012423_020--Hb_016404_010 Hb_000563_460 Hb_000563_460 Hb_012423_020--Hb_000563_460 Hb_000796_200--Hb_000506_140 Hb_000796_200--Hb_016404_010 Hb_011287_020 Hb_011287_020 Hb_000796_200--Hb_011287_020 Hb_116349_090 Hb_116349_090 Hb_000796_200--Hb_116349_090 Hb_000796_200--Hb_136027_010 Hb_009247_020--Hb_136027_010 Hb_005568_060 Hb_005568_060 Hb_009247_020--Hb_005568_060 Hb_009189_010 Hb_009189_010 Hb_009247_020--Hb_009189_010 Hb_001411_150 Hb_001411_150 Hb_009247_020--Hb_001411_150 Hb_009247_020--Hb_000563_460 Hb_009247_020--Hb_016404_010 Hb_003582_020 Hb_003582_020 Hb_136027_010--Hb_003582_020 Hb_136027_010--Hb_016404_010 Hb_035391_010 Hb_035391_010 Hb_136027_010--Hb_035391_010 Hb_001846_040 Hb_001846_040 Hb_136027_010--Hb_001846_040 Hb_002311_490 Hb_002311_490 Hb_000506_140--Hb_002311_490 Hb_000506_140--Hb_016404_010 Hb_000465_330 Hb_000465_330 Hb_000506_140--Hb_000465_330 Hb_000506_130 Hb_000506_130 Hb_000506_140--Hb_000506_130 Hb_000506_140--Hb_116349_090 Hb_016404_010--Hb_005568_060 Hb_016404_010--Hb_002311_490 Hb_016404_010--Hb_000465_330 Hb_000563_460--Hb_002311_490 Hb_000016_220 Hb_000016_220 Hb_000563_460--Hb_000016_220 Hb_011671_290 Hb_011671_290 Hb_000563_460--Hb_011671_290 Hb_073870_020 Hb_073870_020 Hb_000563_460--Hb_073870_020 Hb_000563_460--Hb_000506_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.175561 28.5372 4.43832 5.82292 0.882612 1.28685
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.334141 1.57365

CAGE analysis