Hb_012423_050

Information

Type -
Description -
Location Contig12423: 58697-63453
Sequence    

Annotation

kegg
ID rcu:RCOM_1681440
description hypothetical protein
nr
ID XP_012087064.1
description PREDICTED: transmembrane protein 64 [Jatropha curcas]
swissprot
ID Q55909
description TVP38/TMEM64 family membrane protein slr0305 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0305 PE=3 SV=1
trembl
ID A0A067JNL0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20727 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07378: 58689-63328 , PASA_asmbl_07379: 62053-62185
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012423_050 0.0 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
2 Hb_001006_180 0.0818953639 - - PREDICTED: endonuclease V-like [Jatropha curcas]
3 Hb_001762_060 0.0920289129 - - pantothenate kinase, putative [Ricinus communis]
4 Hb_001427_230 0.106967156 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000398_160 0.107383678 - - GDP-mannose transporter, putative [Ricinus communis]
6 Hb_009265_060 0.1261996567 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
7 Hb_000032_040 0.1262398937 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
8 Hb_162275_030 0.1271798965 - - PREDICTED: uncharacterized protein LOC105646638 [Jatropha curcas]
9 Hb_171554_080 0.1299169 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
10 Hb_000012_230 0.1305804933 - - PREDICTED: uncharacterized protein LOC105629874 [Jatropha curcas]
11 Hb_012573_030 0.1307630244 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003929_120 0.1311842611 - - PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Jatropha curcas]
13 Hb_004077_030 0.1321017122 - - hypothetical protein EUGRSUZ_K01571 [Eucalyptus grandis]
14 Hb_006831_030 0.1335686642 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
15 Hb_004324_050 0.1340159895 - - PREDICTED: spermine synthase [Jatropha curcas]
16 Hb_000976_360 0.134321197 - - PREDICTED: uncharacterized protein LOC105646237 [Jatropha curcas]
17 Hb_002352_010 0.1354793662 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
18 Hb_003147_050 0.1354865403 - - nucleic acid binding protein, putative [Ricinus communis]
19 Hb_002078_460 0.136020447 - - -
20 Hb_001935_030 0.1374652191 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_012423_050 Hb_012423_050 Hb_001006_180 Hb_001006_180 Hb_012423_050--Hb_001006_180 Hb_001762_060 Hb_001762_060 Hb_012423_050--Hb_001762_060 Hb_001427_230 Hb_001427_230 Hb_012423_050--Hb_001427_230 Hb_000398_160 Hb_000398_160 Hb_012423_050--Hb_000398_160 Hb_009265_060 Hb_009265_060 Hb_012423_050--Hb_009265_060 Hb_000032_040 Hb_000032_040 Hb_012423_050--Hb_000032_040 Hb_001006_180--Hb_001762_060 Hb_024714_060 Hb_024714_060 Hb_001006_180--Hb_024714_060 Hb_006831_030 Hb_006831_030 Hb_001006_180--Hb_006831_030 Hb_001006_180--Hb_000398_160 Hb_162275_030 Hb_162275_030 Hb_001006_180--Hb_162275_030 Hb_001762_060--Hb_000032_040 Hb_000069_100 Hb_000069_100 Hb_001762_060--Hb_000069_100 Hb_001762_060--Hb_024714_060 Hb_001762_060--Hb_000398_160 Hb_001307_090 Hb_001307_090 Hb_001427_230--Hb_001307_090 Hb_000722_040 Hb_000722_040 Hb_001427_230--Hb_000722_040 Hb_001427_230--Hb_000398_160 Hb_000648_020 Hb_000648_020 Hb_001427_230--Hb_000648_020 Hb_000224_120 Hb_000224_120 Hb_001427_230--Hb_000224_120 Hb_124755_010 Hb_124755_010 Hb_001427_230--Hb_124755_010 Hb_000398_160--Hb_006831_030 Hb_004041_040 Hb_004041_040 Hb_000398_160--Hb_004041_040 Hb_000272_070 Hb_000272_070 Hb_000398_160--Hb_000272_070 Hb_000398_160--Hb_000069_100 Hb_003929_120 Hb_003929_120 Hb_000398_160--Hb_003929_120 Hb_009265_060--Hb_024714_060 Hb_012573_030 Hb_012573_030 Hb_009265_060--Hb_012573_030 Hb_004048_050 Hb_004048_050 Hb_009265_060--Hb_004048_050 Hb_171554_080 Hb_171554_080 Hb_009265_060--Hb_171554_080 Hb_000419_040 Hb_000419_040 Hb_009265_060--Hb_000419_040 Hb_009265_060--Hb_001006_180 Hb_011004_010 Hb_011004_010 Hb_000032_040--Hb_011004_010 Hb_000032_040--Hb_001006_180 Hb_000742_270 Hb_000742_270 Hb_000032_040--Hb_000742_270 Hb_004738_010 Hb_004738_010 Hb_000032_040--Hb_004738_010 Hb_002119_120 Hb_002119_120 Hb_000032_040--Hb_002119_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.5947 3.24611 3.68952 26.3326 12.8857 49.0902
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
103.754 71.6556 119.546 20.1464 8.6423

CAGE analysis