Hb_012423_060

Information

Type -
Description -
Location Contig12423: 70147-72888
Sequence    

Annotation

kegg
ID rcu:RCOM_1681450
description leucine-rich repeat transmembrane protein kinase, putative (EC:1.3.1.74)
nr
ID XP_012087063.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g12460 [Jatropha curcas]
swissprot
ID C0LGE4
description Probable LRR receptor-like serine/threonine-protein kinase At1g12460 OS=Arabidopsis thaliana GN=At1g12460 PE=2 SV=1
trembl
ID A0A067JZZ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20726 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable lrr receptor-like serine threonine-protein kinase at1g12460

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07380: 70953-71642 , PASA_asmbl_07381: 72874-73030
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012423_060 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g12460 [Jatropha curcas]
2 Hb_008747_010 0.1404021929 - - PREDICTED: protein argonaute 2-like isoform X1 [Jatropha curcas]
3 Hb_002284_080 0.1614881991 - - protein with unknown function [Ricinus communis]
4 Hb_001381_060 0.1800772255 - - monoxygenase, putative [Ricinus communis]
5 Hb_011618_100 0.1864327701 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA1, putative [Ricinus communis]
6 Hb_002343_010 0.1866782801 - - amino acid binding protein, putative [Ricinus communis]
7 Hb_012092_090 0.1874097493 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280 isoform X2 [Jatropha curcas]
8 Hb_005162_140 0.1884862553 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 8 [Jatropha curcas]
9 Hb_000123_220 0.1909435968 transcription factor TF Family: C2H2 hypothetical protein JCGZ_18434 [Jatropha curcas]
10 Hb_006153_160 0.1939332188 - - PREDICTED: oxysterol-binding protein-related protein 2A isoform X4 [Jatropha curcas]
11 Hb_009189_050 0.1970590835 - - PREDICTED: uncharacterized protein LOC105648080 [Jatropha curcas]
12 Hb_002391_320 0.197164064 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
13 Hb_000123_240 0.1980263899 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
14 Hb_012762_040 0.1985115996 - - big map kinase/bmk, putative [Ricinus communis]
15 Hb_032568_010 0.2013960812 - - PREDICTED: protein phosphatase 2C 56-like [Jatropha curcas]
16 Hb_000020_070 0.202767929 - - PREDICTED: probable serine/threonine-protein kinase NAK [Jatropha curcas]
17 Hb_001474_050 0.2062363339 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
18 Hb_168319_010 0.209302733 - - PREDICTED: ACT domain-containing protein ACR4 isoform X2 [Jatropha curcas]
19 Hb_000193_340 0.209905963 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
20 Hb_000032_510 0.2110844899 - - PREDICTED: SUN domain-containing protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_012423_060 Hb_012423_060 Hb_008747_010 Hb_008747_010 Hb_012423_060--Hb_008747_010 Hb_002284_080 Hb_002284_080 Hb_012423_060--Hb_002284_080 Hb_001381_060 Hb_001381_060 Hb_012423_060--Hb_001381_060 Hb_011618_100 Hb_011618_100 Hb_012423_060--Hb_011618_100 Hb_002343_010 Hb_002343_010 Hb_012423_060--Hb_002343_010 Hb_012092_090 Hb_012092_090 Hb_012423_060--Hb_012092_090 Hb_000186_030 Hb_000186_030 Hb_008747_010--Hb_000186_030 Hb_000753_110 Hb_000753_110 Hb_008747_010--Hb_000753_110 Hb_003299_020 Hb_003299_020 Hb_008747_010--Hb_003299_020 Hb_005545_020 Hb_005545_020 Hb_008747_010--Hb_005545_020 Hb_005622_020 Hb_005622_020 Hb_008747_010--Hb_005622_020 Hb_002000_090 Hb_002000_090 Hb_002284_080--Hb_002000_090 Hb_001433_160 Hb_001433_160 Hb_002284_080--Hb_001433_160 Hb_005054_020 Hb_005054_020 Hb_002284_080--Hb_005054_020 Hb_003710_020 Hb_003710_020 Hb_002284_080--Hb_003710_020 Hb_183086_070 Hb_183086_070 Hb_002284_080--Hb_183086_070 Hb_001353_020 Hb_001353_020 Hb_002284_080--Hb_001353_020 Hb_001486_200 Hb_001486_200 Hb_001381_060--Hb_001486_200 Hb_001381_060--Hb_002284_080 Hb_000913_080 Hb_000913_080 Hb_001381_060--Hb_000913_080 Hb_002686_160 Hb_002686_160 Hb_001381_060--Hb_002686_160 Hb_000123_220 Hb_000123_220 Hb_001381_060--Hb_000123_220 Hb_003670_030 Hb_003670_030 Hb_001381_060--Hb_003670_030 Hb_011618_100--Hb_000913_080 Hb_000813_160 Hb_000813_160 Hb_011618_100--Hb_000813_160 Hb_091889_020 Hb_091889_020 Hb_011618_100--Hb_091889_020 Hb_027654_080 Hb_027654_080 Hb_011618_100--Hb_027654_080 Hb_014720_050 Hb_014720_050 Hb_011618_100--Hb_014720_050 Hb_011618_100--Hb_002284_080 Hb_001054_070 Hb_001054_070 Hb_002343_010--Hb_001054_070 Hb_002774_200 Hb_002774_200 Hb_002343_010--Hb_002774_200 Hb_012762_040 Hb_012762_040 Hb_002343_010--Hb_012762_040 Hb_001616_110 Hb_001616_110 Hb_002343_010--Hb_001616_110 Hb_001269_370 Hb_001269_370 Hb_002343_010--Hb_001269_370 Hb_121089_020 Hb_121089_020 Hb_002343_010--Hb_121089_020 Hb_005162_140 Hb_005162_140 Hb_012092_090--Hb_005162_140 Hb_114310_060 Hb_114310_060 Hb_012092_090--Hb_114310_060 Hb_012092_090--Hb_002284_080 Hb_012092_090--Hb_011618_100 Hb_012092_090--Hb_000123_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0727843 1.52936 2.13565 2.37574 0 0.00680858
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.247709 0.480808 1.56265 0.665384 1.30001

CAGE analysis