Hb_012438_020

Information

Type -
Description -
Location Contig12438: 17829-20628
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012438_020 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_001383_040 0.0004078472 - - PREDICTED: uncharacterized protein LOC105627956 [Jatropha curcas]
3 Hb_003943_060 0.0013292759 - - PREDICTED: uncharacterized protein LOC105636357 [Jatropha curcas]
4 Hb_149253_010 0.0021160444 - - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Gossypium arboreum]
5 Hb_008576_010 0.0063545896 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_000417_330 0.0126196262 - - -
7 Hb_127835_030 0.0183412576 - - -
8 Hb_160879_010 0.0273488386 - - PREDICTED: uncharacterized protein LOC105629277 [Jatropha curcas]
9 Hb_004553_010 0.0311162658 - - PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like [Nicotiana tomentosiformis]
10 Hb_185467_040 0.0312209495 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
11 Hb_003766_020 0.0370511296 - - PREDICTED: uncharacterized protein LOC105648182 [Jatropha curcas]
12 Hb_004400_050 0.0379898608 - - retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa Japonica Group]
13 Hb_010435_010 0.0572034717 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_000493_110 0.0626575148 - - hypothetical protein EUGRSUZ_A02264 [Eucalyptus grandis]
15 Hb_001318_060 0.0658302304 - - contains similarity to reverse transcriptase-like proteins [Arabidopsis thaliana]
16 Hb_031964_010 0.0661978919 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
17 Hb_111985_030 0.0824303719 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
18 Hb_004566_050 0.0828448232 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_000482_100 0.0997828534 - - -
20 Hb_003410_020 0.1039100255 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]

Gene co-expression network

sample Hb_012438_020 Hb_012438_020 Hb_001383_040 Hb_001383_040 Hb_012438_020--Hb_001383_040 Hb_003943_060 Hb_003943_060 Hb_012438_020--Hb_003943_060 Hb_149253_010 Hb_149253_010 Hb_012438_020--Hb_149253_010 Hb_008576_010 Hb_008576_010 Hb_012438_020--Hb_008576_010 Hb_000417_330 Hb_000417_330 Hb_012438_020--Hb_000417_330 Hb_127835_030 Hb_127835_030 Hb_012438_020--Hb_127835_030 Hb_001383_040--Hb_003943_060 Hb_001383_040--Hb_149253_010 Hb_001383_040--Hb_008576_010 Hb_001383_040--Hb_000417_330 Hb_001383_040--Hb_127835_030 Hb_003943_060--Hb_149253_010 Hb_003943_060--Hb_008576_010 Hb_003943_060--Hb_000417_330 Hb_003943_060--Hb_127835_030 Hb_149253_010--Hb_008576_010 Hb_149253_010--Hb_000417_330 Hb_149253_010--Hb_127835_030 Hb_008576_010--Hb_000417_330 Hb_008576_010--Hb_127835_030 Hb_000417_330--Hb_127835_030 Hb_160879_010 Hb_160879_010 Hb_127835_030--Hb_160879_010 Hb_004553_010 Hb_004553_010 Hb_127835_030--Hb_004553_010 Hb_185467_040 Hb_185467_040 Hb_127835_030--Hb_185467_040 Hb_003766_020 Hb_003766_020 Hb_127835_030--Hb_003766_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0147097 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0282325

CAGE analysis