Hb_012447_010

Information

Type -
Description -
Location Contig12447: 25664-34416
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID Q7LHG5
description Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012447_010 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_056199_030 0.2076548892 - - PREDICTED: purine permease 3-like isoform X2 [Gossypium raimondii]
3 Hb_173468_010 0.2254150209 - - Vacuolar sorting receptor 1 precursor, putative [Ricinus communis]
4 Hb_007790_040 0.2791856702 - - PREDICTED: uncharacterized protein LOC104417177 [Eucalyptus grandis]
5 Hb_007181_020 0.2921250401 - - PREDICTED: uncharacterized protein At4g04980-like [Populus euphratica]
6 Hb_119504_010 0.2939597425 - - hypothetical protein JCGZ_15304 [Jatropha curcas]
7 Hb_000465_420 0.3009037078 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105632322 [Jatropha curcas]
8 Hb_000144_040 0.3014897368 - - hypothetical protein POPTR_0006s06790g [Populus trichocarpa]
9 Hb_025311_020 0.3087711819 - - PREDICTED: uncharacterized protein LOC105039527 [Elaeis guineensis]
10 Hb_000173_440 0.3144840989 - - YALI0B05280p [Yarrowia lipolytica]
11 Hb_000205_340 0.3148882386 - - PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]
12 Hb_001987_010 0.3187273969 - - -
13 Hb_029866_030 0.3215013572 - - hypothetical protein CICLE_v10006898mg [Citrus clementina]
14 Hb_003551_030 0.3235477405 - - hypothetical protein POPTR_0016s03850g [Populus trichocarpa]
15 Hb_000446_060 0.3255942025 - - -
16 Hb_000538_180 0.3401203503 - - PREDICTED: probable polyamine oxidase 4 [Jatropha curcas]
17 Hb_002571_090 0.3408776447 - - -
18 Hb_143874_010 0.3409790601 - - PREDICTED: uncharacterized protein LOC105794100 [Gossypium raimondii]
19 Hb_001693_040 0.3421163667 - - -
20 Hb_002659_030 0.3427335353 - - copper transport protein atox1, putative [Ricinus communis]

Gene co-expression network

sample Hb_012447_010 Hb_012447_010 Hb_056199_030 Hb_056199_030 Hb_012447_010--Hb_056199_030 Hb_173468_010 Hb_173468_010 Hb_012447_010--Hb_173468_010 Hb_007790_040 Hb_007790_040 Hb_012447_010--Hb_007790_040 Hb_007181_020 Hb_007181_020 Hb_012447_010--Hb_007181_020 Hb_119504_010 Hb_119504_010 Hb_012447_010--Hb_119504_010 Hb_000465_420 Hb_000465_420 Hb_012447_010--Hb_000465_420 Hb_000144_040 Hb_000144_040 Hb_056199_030--Hb_000144_040 Hb_000173_440 Hb_000173_440 Hb_056199_030--Hb_000173_440 Hb_056199_030--Hb_007181_020 Hb_010883_130 Hb_010883_130 Hb_056199_030--Hb_010883_130 Hb_001304_120 Hb_001304_120 Hb_056199_030--Hb_001304_120 Hb_173468_010--Hb_000465_420 Hb_000191_120 Hb_000191_120 Hb_173468_010--Hb_000191_120 Hb_173468_010--Hb_007790_040 Hb_010736_030 Hb_010736_030 Hb_173468_010--Hb_010736_030 Hb_010757_010 Hb_010757_010 Hb_173468_010--Hb_010757_010 Hb_106815_010 Hb_106815_010 Hb_007790_040--Hb_106815_010 Hb_115376_010 Hb_115376_010 Hb_007790_040--Hb_115376_010 Hb_007790_040--Hb_000191_120 Hb_006157_050 Hb_006157_050 Hb_007790_040--Hb_006157_050 Hb_065943_010 Hb_065943_010 Hb_007790_040--Hb_065943_010 Hb_004078_030 Hb_004078_030 Hb_007790_040--Hb_004078_030 Hb_007199_010 Hb_007199_010 Hb_007181_020--Hb_007199_010 Hb_007181_020--Hb_119504_010 Hb_001780_120 Hb_001780_120 Hb_007181_020--Hb_001780_120 Hb_002078_440 Hb_002078_440 Hb_007181_020--Hb_002078_440 Hb_013893_010 Hb_013893_010 Hb_007181_020--Hb_013893_010 Hb_000856_150 Hb_000856_150 Hb_007181_020--Hb_000856_150 Hb_119504_010--Hb_001780_120 Hb_094900_010 Hb_094900_010 Hb_119504_010--Hb_094900_010 Hb_009005_050 Hb_009005_050 Hb_119504_010--Hb_009005_050 Hb_000915_030 Hb_000915_030 Hb_119504_010--Hb_000915_030 Hb_000679_220 Hb_000679_220 Hb_119504_010--Hb_000679_220 Hb_000465_420--Hb_000191_120 Hb_000465_420--Hb_010757_010 Hb_000465_420--Hb_007790_040 Hb_000465_420--Hb_056199_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00454926 0 0.0101514 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0164298 0.0947055 0.00975969 0.0352249

CAGE analysis