Hb_012490_030

Information

Type -
Description -
Location Contig12490: 43777-51592
Sequence    

Annotation

kegg
ID pop:POPTR_0018s05420g
description POPTRDRAFT_577971; MAP kinase kinase family protein
nr
ID XP_012076983.1
description PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
swissprot
ID Q9S7U9
description Mitogen-activated protein kinase kinase 2 OS=Arabidopsis thaliana GN=MKK2 PE=1 SV=2
trembl
ID A0A067KCC7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07442 PE=4 SV=1
Gene Ontology
ID GO:0004672
description mitogen-activated protein kinase kinase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07560: 43788-51246
cDNA
(Sanger)
(ID:Location)		 012_G22.ab1: 46082-51198

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012490_030 0.0 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
2 Hb_002272_180 0.0711842862 - - hypothetical protein JCGZ_23380 [Jatropha curcas]
3 Hb_000429_120 0.0802612347 - - PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Jatropha curcas]
4 Hb_020719_030 0.080602966 - - PREDICTED: ER membrane protein complex subunit 3-like [Jatropha curcas]
5 Hb_001866_110 0.0822293709 - - PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
6 Hb_000889_020 0.0828032589 - - ribosome biogenesis protein brix, putative [Ricinus communis]
7 Hb_002784_060 0.0828046069 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA6 isoform X1 [Jatropha curcas]
8 Hb_012799_130 0.0834727658 - - PREDICTED: flap endonuclease GEN-like 2 [Jatropha curcas]
9 Hb_000627_030 0.0867005624 - - amine oxidase, putative [Ricinus communis]
10 Hb_033834_060 0.0867849361 - - DNA-binding bromodomain-containing family protein [Populus trichocarpa]
11 Hb_026099_010 0.0868732711 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
12 Hb_000956_030 0.0884025048 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
13 Hb_003673_060 0.0901069194 - - PREDICTED: probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 [Jatropha curcas]
14 Hb_002044_060 0.0901889174 - - elongation factor ts, putative [Ricinus communis]
15 Hb_002174_060 0.0904052062 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
16 Hb_006114_030 0.0913534474 transcription factor TF Family: SET hypothetical protein CISIN_1g011639mg [Citrus sinensis]
17 Hb_009133_010 0.09204262 - - PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase-like [Jatropha curcas]
18 Hb_002027_270 0.0922094498 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
19 Hb_004450_010 0.0927868379 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
20 Hb_000373_240 0.0936994193 - - PREDICTED: uncharacterized protein LOC105640940 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_012490_030 Hb_012490_030 Hb_002272_180 Hb_002272_180 Hb_012490_030--Hb_002272_180 Hb_000429_120 Hb_000429_120 Hb_012490_030--Hb_000429_120 Hb_020719_030 Hb_020719_030 Hb_012490_030--Hb_020719_030 Hb_001866_110 Hb_001866_110 Hb_012490_030--Hb_001866_110 Hb_000889_020 Hb_000889_020 Hb_012490_030--Hb_000889_020 Hb_002784_060 Hb_002784_060 Hb_012490_030--Hb_002784_060 Hb_002272_180--Hb_020719_030 Hb_000364_060 Hb_000364_060 Hb_002272_180--Hb_000364_060 Hb_002067_040 Hb_002067_040 Hb_002272_180--Hb_002067_040 Hb_004450_010 Hb_004450_010 Hb_002272_180--Hb_004450_010 Hb_033834_060 Hb_033834_060 Hb_002272_180--Hb_033834_060 Hb_000429_120--Hb_001866_110 Hb_002027_270 Hb_002027_270 Hb_000429_120--Hb_002027_270 Hb_004619_050 Hb_004619_050 Hb_000429_120--Hb_004619_050 Hb_000046_440 Hb_000046_440 Hb_000429_120--Hb_000046_440 Hb_016898_010 Hb_016898_010 Hb_000429_120--Hb_016898_010 Hb_028487_110 Hb_028487_110 Hb_000429_120--Hb_028487_110 Hb_020719_030--Hb_033834_060 Hb_001488_410 Hb_001488_410 Hb_020719_030--Hb_001488_410 Hb_004117_130 Hb_004117_130 Hb_020719_030--Hb_004117_130 Hb_000260_170 Hb_000260_170 Hb_020719_030--Hb_000260_170 Hb_103012_010 Hb_103012_010 Hb_020719_030--Hb_103012_010 Hb_005977_090 Hb_005977_090 Hb_001866_110--Hb_005977_090 Hb_000179_020 Hb_000179_020 Hb_001866_110--Hb_000179_020 Hb_002174_060 Hb_002174_060 Hb_001866_110--Hb_002174_060 Hb_003428_070 Hb_003428_070 Hb_001866_110--Hb_003428_070 Hb_001866_110--Hb_000889_020 Hb_000373_240 Hb_000373_240 Hb_000889_020--Hb_000373_240 Hb_000166_110 Hb_000166_110 Hb_000889_020--Hb_000166_110 Hb_007218_080 Hb_007218_080 Hb_000889_020--Hb_007218_080 Hb_011794_060 Hb_011794_060 Hb_000889_020--Hb_011794_060 Hb_000889_020--Hb_000179_020 Hb_006692_030 Hb_006692_030 Hb_000889_020--Hb_006692_030 Hb_000567_050 Hb_000567_050 Hb_002784_060--Hb_000567_050 Hb_002784_060--Hb_002027_270 Hb_006114_030 Hb_006114_030 Hb_002784_060--Hb_006114_030 Hb_000031_220 Hb_000031_220 Hb_002784_060--Hb_000031_220 Hb_000212_240 Hb_000212_240 Hb_002784_060--Hb_000212_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.5876 20.5012 14.3144 21.2826 51.8188 76.9398
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.2518 36.9328 20.3798 40.9681 25.6769

CAGE analysis