Hb_012490_040

Information

Type -
Description -
Location Contig12490: 55032-56967
Sequence    

Annotation

kegg
ID rcu:RCOM_1046330
description pre-mRNA cleavage factor im, 25kD subunit, putative
nr
ID XP_002514092.1
description pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
swissprot
ID Q94AF0
description Pre-mRNA cleavage factor Im 25 kDa subunit 1 OS=Arabidopsis thaliana GN=CFIS1 PE=1 SV=1
trembl
ID B9RK48
description Pre-mRNA cleavage factor im, 25kD subunit, putative OS=Ricinus communis GN=RCOM_1046330 PE=4 SV=1
Gene Ontology
ID GO:0005849
description cleavage and polyadenylation specificity factor subunit 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07565: 55161-55786
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012490_040 0.0 - - pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
2 Hb_034271_030 0.0868300306 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Jatropha curcas]
3 Hb_000914_070 0.0923402341 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8 [Jatropha curcas]
4 Hb_000122_130 0.0962207746 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003195_060 0.0981278544 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
6 Hb_049675_010 0.0993153998 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
7 Hb_002890_340 0.0996955172 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
8 Hb_015306_020 0.1008104395 transcription factor TF Family: MYB-related PREDICTED: dnaJ homolog subfamily C member 2 [Jatropha curcas]
9 Hb_002902_110 0.1016077587 - - PREDICTED: casein kinase II subunit alpha [Jatropha curcas]
10 Hb_000200_050 0.1021953401 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_010436_020 0.1090257613 - - Dicer-like protein 4 [Morus notabilis]
12 Hb_004976_030 0.1101076155 - - hypothetical protein POPTR_0005s04700g [Populus trichocarpa]
13 Hb_004055_140 0.1107265956 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
14 Hb_001789_090 0.1120095944 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
15 Hb_007426_030 0.1127151749 - - PREDICTED: pentatricopeptide repeat-containing protein At2g34400 [Jatropha curcas]
16 Hb_002686_270 0.1137353484 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000418_100 0.1142049422 - - PREDICTED: F-box protein SKIP19-like [Gossypium raimondii]
18 Hb_001266_080 0.1142385399 - - PREDICTED: eukaryotic translation initiation factor 2 subunit gamma-like [Jatropha curcas]
19 Hb_001019_060 0.1144252783 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Jatropha curcas]
20 Hb_003893_010 0.1153953888 - - hypothetical protein M569_16374 [Genlisea aurea]

Gene co-expression network

sample Hb_012490_040 Hb_012490_040 Hb_034271_030 Hb_034271_030 Hb_012490_040--Hb_034271_030 Hb_000914_070 Hb_000914_070 Hb_012490_040--Hb_000914_070 Hb_000122_130 Hb_000122_130 Hb_012490_040--Hb_000122_130 Hb_003195_060 Hb_003195_060 Hb_012490_040--Hb_003195_060 Hb_049675_010 Hb_049675_010 Hb_012490_040--Hb_049675_010 Hb_002890_340 Hb_002890_340 Hb_012490_040--Hb_002890_340 Hb_027450_010 Hb_027450_010 Hb_034271_030--Hb_027450_010 Hb_010436_020 Hb_010436_020 Hb_034271_030--Hb_010436_020 Hb_000244_160 Hb_000244_160 Hb_034271_030--Hb_000244_160 Hb_001226_020 Hb_001226_020 Hb_034271_030--Hb_001226_020 Hb_000723_260 Hb_000723_260 Hb_034271_030--Hb_000723_260 Hb_000364_150 Hb_000364_150 Hb_000914_070--Hb_000364_150 Hb_005117_010 Hb_005117_010 Hb_000914_070--Hb_005117_010 Hb_001266_080 Hb_001266_080 Hb_000914_070--Hb_001266_080 Hb_000347_200 Hb_000347_200 Hb_000914_070--Hb_000347_200 Hb_004055_140 Hb_004055_140 Hb_000914_070--Hb_004055_140 Hb_000122_130--Hb_049675_010 Hb_000122_130--Hb_010436_020 Hb_000122_130--Hb_002890_340 Hb_012395_190 Hb_012395_190 Hb_000122_130--Hb_012395_190 Hb_005280_010 Hb_005280_010 Hb_000122_130--Hb_005280_010 Hb_008511_050 Hb_008511_050 Hb_003195_060--Hb_008511_050 Hb_002609_110 Hb_002609_110 Hb_003195_060--Hb_002609_110 Hb_003195_070 Hb_003195_070 Hb_003195_060--Hb_003195_070 Hb_002811_360 Hb_002811_360 Hb_003195_060--Hb_002811_360 Hb_006332_010 Hb_006332_010 Hb_003195_060--Hb_006332_010 Hb_005754_060 Hb_005754_060 Hb_003195_060--Hb_005754_060 Hb_049675_010--Hb_010436_020 Hb_049675_010--Hb_034271_030 Hb_049675_010--Hb_002890_340 Hb_049675_010--Hb_005280_010 Hb_000421_260 Hb_000421_260 Hb_002890_340--Hb_000421_260 Hb_015306_020 Hb_015306_020 Hb_002890_340--Hb_015306_020 Hb_002039_010 Hb_002039_010 Hb_002890_340--Hb_002039_010 Hb_004046_010 Hb_004046_010 Hb_002890_340--Hb_004046_010 Hb_001720_050 Hb_001720_050 Hb_002890_340--Hb_001720_050 Hb_009111_050 Hb_009111_050 Hb_002890_340--Hb_009111_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.662 5.39018 1.18793 6.72129 17.1956 31.652
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.6014 15.2406 25.6333 11.8448 5.6825

CAGE analysis