Hb_012490_050

Information

Type -
Description -
Location Contig12490: 68887-73574
Sequence    

Annotation

kegg
ID rcu:RCOM_1046320
description hypothetical protein
nr
ID XP_012076987.1
description PREDICTED: uncharacterized protein LOC105637921 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KFV1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07444 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l18a-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07566: 69006-73511 , PASA_asmbl_07567: 70347-70615
cDNA
(Sanger)
(ID:Location)		 048_A14.ab1: 69006-73337

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012490_050 0.0 - - PREDICTED: uncharacterized protein LOC105637921 [Jatropha curcas]
2 Hb_000834_030 0.0755561281 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
3 Hb_005463_140 0.0826779621 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
4 Hb_011644_030 0.0838845892 - - PREDICTED: 50S ribosomal protein L12, cyanelle-like [Pyrus x bretschneideri]
5 Hb_000707_020 0.0863018849 - - hypothetical protein B456_002G255500 [Gossypium raimondii]
6 Hb_000817_030 0.0883929259 - - mak, putative [Ricinus communis]
7 Hb_004659_060 0.0921482381 - - RAS-related GTP-binding family protein [Populus trichocarpa]
8 Hb_124755_010 0.0933849619 - - PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Jatropha curcas]
9 Hb_026048_070 0.1000897998 - - PREDICTED: uncharacterized protein LOC105645736 [Jatropha curcas]
10 Hb_000302_280 0.100127776 - - hypothetical protein ZEAMMB73_772347 [Zea mays]
11 Hb_000648_020 0.1001557464 - - PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]
12 Hb_001284_030 0.1035759563 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
13 Hb_000389_080 0.104306867 - - PREDICTED: uncharacterized protein At4g26485-like [Jatropha curcas]
14 Hb_001005_080 0.1052688737 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
15 Hb_000072_180 0.1058416056 - - PREDICTED: EVI5-like protein [Jatropha curcas]
16 Hb_005474_060 0.106083601 - - hypothetical protein PHAVU_011G019700g [Phaseolus vulgaris]
17 Hb_033153_060 0.1068186889 - - Transcription elongation factor, putative [Ricinus communis]
18 Hb_027625_010 0.1070237285 - - PREDICTED: protein sym-1-like [Jatropha curcas]
19 Hb_001484_010 0.1074982466 - - hypothetical protein POPTR_0005s07440g [Populus trichocarpa]
20 Hb_003623_050 0.1075665113 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_012490_050 Hb_012490_050 Hb_000834_030 Hb_000834_030 Hb_012490_050--Hb_000834_030 Hb_005463_140 Hb_005463_140 Hb_012490_050--Hb_005463_140 Hb_011644_030 Hb_011644_030 Hb_012490_050--Hb_011644_030 Hb_000707_020 Hb_000707_020 Hb_012490_050--Hb_000707_020 Hb_000817_030 Hb_000817_030 Hb_012490_050--Hb_000817_030 Hb_004659_060 Hb_004659_060 Hb_012490_050--Hb_004659_060 Hb_000834_030--Hb_000707_020 Hb_000834_030--Hb_005463_140 Hb_003777_210 Hb_003777_210 Hb_000834_030--Hb_003777_210 Hb_001284_030 Hb_001284_030 Hb_000834_030--Hb_001284_030 Hb_000042_200 Hb_000042_200 Hb_000834_030--Hb_000042_200 Hb_072922_020 Hb_072922_020 Hb_005463_140--Hb_072922_020 Hb_000224_140 Hb_000224_140 Hb_005463_140--Hb_000224_140 Hb_001155_040 Hb_001155_040 Hb_005463_140--Hb_001155_040 Hb_068056_030 Hb_068056_030 Hb_005463_140--Hb_068056_030 Hb_001512_080 Hb_001512_080 Hb_005463_140--Hb_001512_080 Hb_000302_280 Hb_000302_280 Hb_005463_140--Hb_000302_280 Hb_006541_010 Hb_006541_010 Hb_011644_030--Hb_006541_010 Hb_004567_120 Hb_004567_120 Hb_011644_030--Hb_004567_120 Hb_003994_040 Hb_003994_040 Hb_011644_030--Hb_003994_040 Hb_026048_070 Hb_026048_070 Hb_011644_030--Hb_026048_070 Hb_000136_170 Hb_000136_170 Hb_011644_030--Hb_000136_170 Hb_000364_030 Hb_000364_030 Hb_011644_030--Hb_000364_030 Hb_000707_020--Hb_000302_280 Hb_138585_040 Hb_138585_040 Hb_000707_020--Hb_138585_040 Hb_001005_080 Hb_001005_080 Hb_000707_020--Hb_001005_080 Hb_000049_050 Hb_000049_050 Hb_000707_020--Hb_000049_050 Hb_027625_010 Hb_027625_010 Hb_000817_030--Hb_027625_010 Hb_002742_090 Hb_002742_090 Hb_000817_030--Hb_002742_090 Hb_000817_030--Hb_005463_140 Hb_005883_100 Hb_005883_100 Hb_000817_030--Hb_005883_100 Hb_001519_030 Hb_001519_030 Hb_000817_030--Hb_001519_030 Hb_017948_010 Hb_017948_010 Hb_000817_030--Hb_017948_010 Hb_001008_090 Hb_001008_090 Hb_004659_060--Hb_001008_090 Hb_000417_260 Hb_000417_260 Hb_004659_060--Hb_000417_260 Hb_000122_020 Hb_000122_020 Hb_004659_060--Hb_000122_020 Hb_114310_080 Hb_114310_080 Hb_004659_060--Hb_114310_080 Hb_004449_200 Hb_004449_200 Hb_004659_060--Hb_004449_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.6264 3.16275 2.19582 11.1699 5.41195 11.588
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.0734 33.8127 19.3278 11.825 10.3268

CAGE analysis