Hb_012490_060

Information

Type -
Description -
Location Contig12490: 73906-76974
Sequence    

Annotation

kegg
ID tcc:TCM_037591
description Zinc ion binding, putative isoform 1
nr
ID XP_012076988.1
description PREDICTED: UBP1-associated proteins 1C isoform X1 [Jatropha curcas]
swissprot
ID O64571
description UBP1-associated proteins 1C OS=Arabidopsis thaliana GN=UBA1C PE=3 SV=2
trembl
ID A0A067KPX9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07445 PE=4 SV=1
Gene Ontology
ID GO:0005488
description ubp1-associated proteins 1c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07569: 74005-75154 , PASA_asmbl_07570: 75179-75839 , PASA_asmbl_07571: 76139-76607
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012490_060 0.0 - - PREDICTED: UBP1-associated proteins 1C isoform X1 [Jatropha curcas]
2 Hb_150651_030 0.0800592385 - - PREDICTED: metallophosphoesterase 1-like [Jatropha curcas]
3 Hb_001504_040 0.0825023651 - - PREDICTED: factor of DNA methylation 1-like [Jatropha curcas]
4 Hb_005488_150 0.10334273 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_000563_130 0.1035145277 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
6 Hb_012053_080 0.105493211 - - AP-2 complex subunit alpha, putative [Ricinus communis]
7 Hb_002641_130 0.1057001948 - - PREDICTED: uncharacterized protein LOC105643556 [Jatropha curcas]
8 Hb_005053_010 0.1059328038 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
9 Hb_001025_080 0.1072310169 - - hypothetical protein JCGZ_11431 [Jatropha curcas]
10 Hb_002631_140 0.1087730451 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [Jatropha curcas]
11 Hb_000007_280 0.1091605461 - - hypothetical protein VITISV_000066 [Vitis vinifera]
12 Hb_034432_030 0.109402914 - - PREDICTED: probable glycosyltransferase At5g20260 isoform X1 [Jatropha curcas]
13 Hb_162275_040 0.1094405916 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003104_040 0.1096922676 - - PREDICTED: insulin-degrading enzyme isoform X1 [Jatropha curcas]
15 Hb_000082_070 0.1103338001 - - PREDICTED: phosphatidylinositol 4-kinase alpha 1 [Jatropha curcas]
16 Hb_001379_110 0.1111217308 - - PREDICTED: sec1 family domain-containing protein MIP3 [Jatropha curcas]
17 Hb_003436_020 0.1116668197 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105636276 isoform X2 [Jatropha curcas]
18 Hb_000261_030 0.1120156648 - - PREDICTED: uncharacterized protein LOC105633147 [Jatropha curcas]
19 Hb_009771_110 0.1120887939 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2 [Jatropha curcas]
20 Hb_001935_110 0.1135874871 - - PREDICTED: T-complex protein 1 subunit alpha [Jatropha curcas]

Gene co-expression network

sample Hb_012490_060 Hb_012490_060 Hb_150651_030 Hb_150651_030 Hb_012490_060--Hb_150651_030 Hb_001504_040 Hb_001504_040 Hb_012490_060--Hb_001504_040 Hb_005488_150 Hb_005488_150 Hb_012490_060--Hb_005488_150 Hb_000563_130 Hb_000563_130 Hb_012490_060--Hb_000563_130 Hb_012053_080 Hb_012053_080 Hb_012490_060--Hb_012053_080 Hb_002641_130 Hb_002641_130 Hb_012490_060--Hb_002641_130 Hb_004032_410 Hb_004032_410 Hb_150651_030--Hb_004032_410 Hb_027472_120 Hb_027472_120 Hb_150651_030--Hb_027472_120 Hb_034432_030 Hb_034432_030 Hb_150651_030--Hb_034432_030 Hb_000544_010 Hb_000544_010 Hb_150651_030--Hb_000544_010 Hb_001379_110 Hb_001379_110 Hb_150651_030--Hb_001379_110 Hb_001369_040 Hb_001369_040 Hb_001504_040--Hb_001369_040 Hb_005053_010 Hb_005053_010 Hb_001504_040--Hb_005053_010 Hb_009296_010 Hb_009296_010 Hb_001504_040--Hb_009296_010 Hb_000035_410 Hb_000035_410 Hb_001504_040--Hb_000035_410 Hb_160459_040 Hb_160459_040 Hb_001504_040--Hb_160459_040 Hb_148909_030 Hb_148909_030 Hb_005488_150--Hb_148909_030 Hb_000183_020 Hb_000183_020 Hb_005488_150--Hb_000183_020 Hb_000069_320 Hb_000069_320 Hb_005488_150--Hb_000069_320 Hb_004453_110 Hb_004453_110 Hb_005488_150--Hb_004453_110 Hb_009503_030 Hb_009503_030 Hb_005488_150--Hb_009503_030 Hb_000429_220 Hb_000429_220 Hb_005488_150--Hb_000429_220 Hb_004267_040 Hb_004267_040 Hb_000563_130--Hb_004267_040 Hb_003645_060 Hb_003645_060 Hb_000563_130--Hb_003645_060 Hb_000603_030 Hb_000603_030 Hb_000563_130--Hb_000603_030 Hb_000398_080 Hb_000398_080 Hb_000563_130--Hb_000398_080 Hb_000011_100 Hb_000011_100 Hb_000563_130--Hb_000011_100 Hb_000836_410 Hb_000836_410 Hb_000563_130--Hb_000836_410 Hb_001935_110 Hb_001935_110 Hb_012053_080--Hb_001935_110 Hb_012053_080--Hb_160459_040 Hb_000035_170 Hb_000035_170 Hb_012053_080--Hb_000035_170 Hb_027380_140 Hb_027380_140 Hb_012053_080--Hb_027380_140 Hb_012053_080--Hb_009296_010 Hb_025477_040 Hb_025477_040 Hb_012053_080--Hb_025477_040 Hb_000573_060 Hb_000573_060 Hb_002641_130--Hb_000573_060 Hb_001244_150 Hb_001244_150 Hb_002641_130--Hb_001244_150 Hb_002641_130--Hb_000563_130 Hb_009486_080 Hb_009486_080 Hb_002641_130--Hb_009486_080 Hb_001001_150 Hb_001001_150 Hb_002641_130--Hb_001001_150 Hb_000086_150 Hb_000086_150 Hb_002641_130--Hb_000086_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.5065 9.37231 14.2418 10.4363 23.9872 20.2655
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.87544 6.95438 8.15382 14.4242 17.814

CAGE analysis