Hb_012490_070

Information

Type -
Description -
Location Contig12490: 80881-86055
Sequence    

Annotation

kegg
ID rcu:RCOM_1046300
description hypothetical protein
nr
ID XP_002514089.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SZQ5
description WD repeat-containing protein VIP3 OS=Arabidopsis thaliana GN=VIP3 PE=1 SV=1
trembl
ID B9RK45
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1046300 PE=4 SV=1
Gene Ontology
ID GO:0005829
description wd repeat-containing protein 61

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07574: 83376-86161
cDNA
(Sanger)
(ID:Location)		 021_A13.ab1: 83376-85725 , 036_P12.ab1: 83376-85706 , 041_B24.ab1: 85364-85504

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012490_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001545_170 0.0535848759 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
3 Hb_000250_060 0.0668806951 - - PREDICTED: 28S ribosomal protein S29, mitochondrial [Jatropha curcas]
4 Hb_005539_280 0.0730385787 - - PREDICTED: uncharacterized protein LOC105644562 [Jatropha curcas]
5 Hb_000120_460 0.0738537187 - - PREDICTED: thioredoxin reductase NTRB-like [Jatropha curcas]
6 Hb_002197_050 0.0763205189 - - hypothetical protein CICLE_v10002157mg [Citrus clementina]
7 Hb_000258_260 0.078877627 - - PREDICTED: protein HGH1 homolog [Jatropha curcas]
8 Hb_004767_080 0.0799217831 - - PREDICTED: mitochondrial ATPase complex subunit ATP10 isoform X1 [Jatropha curcas]
9 Hb_002183_060 0.0809578783 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
10 Hb_010812_120 0.0811444741 - - hypothetical protein JCGZ_03293 [Jatropha curcas]
11 Hb_000016_160 0.0819111417 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
12 Hb_000069_420 0.082202476 - - Beclin-1, putative [Ricinus communis]
13 Hb_001828_060 0.082548102 desease resistance Gene Name: AAA_31 nucleotide-binding protein, putative [Ricinus communis]
14 Hb_001195_200 0.0838825896 - - PREDICTED: uncharacterized protein LOC105633802 [Jatropha curcas]
15 Hb_005305_150 0.0841344687 - - PREDICTED: 40S ribosomal protein S2-4-like [Jatropha curcas]
16 Hb_086639_030 0.08442198 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
17 Hb_007676_080 0.0865246277 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14-like [Jatropha curcas]
18 Hb_000329_760 0.0868411022 - - PREDICTED: probable mitochondrial import inner membrane translocase subunit TIM21 [Jatropha curcas]
19 Hb_003994_260 0.0868631101 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
20 Hb_000431_170 0.0875906762 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]

Gene co-expression network

sample Hb_012490_070 Hb_012490_070 Hb_001545_170 Hb_001545_170 Hb_012490_070--Hb_001545_170 Hb_000250_060 Hb_000250_060 Hb_012490_070--Hb_000250_060 Hb_005539_280 Hb_005539_280 Hb_012490_070--Hb_005539_280 Hb_000120_460 Hb_000120_460 Hb_012490_070--Hb_000120_460 Hb_002197_050 Hb_002197_050 Hb_012490_070--Hb_002197_050 Hb_000258_260 Hb_000258_260 Hb_012490_070--Hb_000258_260 Hb_089032_030 Hb_089032_030 Hb_001545_170--Hb_089032_030 Hb_001545_170--Hb_000120_460 Hb_003349_090 Hb_003349_090 Hb_001545_170--Hb_003349_090 Hb_010812_120 Hb_010812_120 Hb_001545_170--Hb_010812_120 Hb_002676_090 Hb_002676_090 Hb_001545_170--Hb_002676_090 Hb_001633_210 Hb_001633_210 Hb_000250_060--Hb_001633_210 Hb_000250_060--Hb_005539_280 Hb_001726_020 Hb_001726_020 Hb_000250_060--Hb_001726_020 Hb_000297_010 Hb_000297_010 Hb_000250_060--Hb_000297_010 Hb_000250_060--Hb_010812_120 Hb_002046_180 Hb_002046_180 Hb_000250_060--Hb_002046_180 Hb_005539_280--Hb_001726_020 Hb_000504_140 Hb_000504_140 Hb_005539_280--Hb_000504_140 Hb_058999_020 Hb_058999_020 Hb_005539_280--Hb_058999_020 Hb_001633_050 Hb_001633_050 Hb_005539_280--Hb_001633_050 Hb_005779_060 Hb_005779_060 Hb_005539_280--Hb_005779_060 Hb_000976_170 Hb_000976_170 Hb_000120_460--Hb_000976_170 Hb_025240_040 Hb_025240_040 Hb_000120_460--Hb_025240_040 Hb_004218_110 Hb_004218_110 Hb_000120_460--Hb_004218_110 Hb_003697_040 Hb_003697_040 Hb_000120_460--Hb_003697_040 Hb_108350_010 Hb_108350_010 Hb_000120_460--Hb_108350_010 Hb_000137_090 Hb_000137_090 Hb_002197_050--Hb_000137_090 Hb_000948_160 Hb_000948_160 Hb_002197_050--Hb_000948_160 Hb_000431_170 Hb_000431_170 Hb_002197_050--Hb_000431_170 Hb_000003_320 Hb_000003_320 Hb_002197_050--Hb_000003_320 Hb_000312_080 Hb_000312_080 Hb_002197_050--Hb_000312_080 Hb_031340_050 Hb_031340_050 Hb_002197_050--Hb_031340_050 Hb_003994_260 Hb_003994_260 Hb_000258_260--Hb_003994_260 Hb_001195_200 Hb_001195_200 Hb_000258_260--Hb_001195_200 Hb_000069_420 Hb_000069_420 Hb_000258_260--Hb_000069_420 Hb_000982_080 Hb_000982_080 Hb_000258_260--Hb_000982_080 Hb_034406_030 Hb_034406_030 Hb_000258_260--Hb_034406_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.43569 6.32471 6.36443 7.11372 8.07037 7.98499
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8271 19.6578 13.0397 12.9494 7.6717

CAGE analysis