Hb_012490_090

Information

Type -
Description -
Location Contig12490: 93843-112676
Sequence    

Annotation

kegg
ID rcu:RCOM_1046280
description myosin XI, putative
nr
ID XP_012076995.1
description PREDICTED: myosin-17 [Jatropha curcas]
swissprot
ID F4K5J1
description Myosin-17 OS=Arabidopsis thaliana GN=XI-K PE=1 SV=2
trembl
ID A0A067KFV5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07449 PE=4 SV=1
Gene Ontology
ID GO:0016459
description myosin-j heavy chain

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07577: 94119-111793 , PASA_asmbl_07579: 102610-102766
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012490_090 0.0 - - PREDICTED: myosin-17 [Jatropha curcas]
2 Hb_000215_140 0.0664563178 - - PREDICTED: phosphoinositide 3-kinase regulatory subunit 4-like [Malus domestica]
3 Hb_000313_120 0.072231805 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]
4 Hb_146224_010 0.0802033772 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002260_050 0.0824120609 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001217_050 0.085194884 - - actin binding protein, putative [Ricinus communis]
7 Hb_013358_010 0.0860849337 - - hypothetical protein JCGZ_07102 [Jatropha curcas]
8 Hb_001366_310 0.0883856767 - - PREDICTED: protein phosphatase 2C 32 [Jatropha curcas]
9 Hb_001550_060 0.0889468624 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X4 [Jatropha curcas]
10 Hb_004079_060 0.089775786 - - hypothetical protein JCGZ_07228 [Jatropha curcas]
11 Hb_001322_130 0.0901041424 - - PREDICTED: putative glycerol-3-phosphate transporter 4 [Jatropha curcas]
12 Hb_000976_210 0.0903681717 - - PREDICTED: protein PAT1 homolog 1 isoform X1 [Jatropha curcas]
13 Hb_143766_060 0.091561315 - - PREDICTED: F-box/LRR-repeat protein At4g29420 [Jatropha curcas]
14 Hb_002063_020 0.0917948739 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17140 [Jatropha curcas]
15 Hb_000009_600 0.0931584466 - - PREDICTED: uncharacterized protein LOC105639637 [Jatropha curcas]
16 Hb_003494_020 0.094220118 - - ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
17 Hb_062226_070 0.0943909515 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X1 [Jatropha curcas]
18 Hb_002316_150 0.0945405717 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
19 Hb_002234_170 0.0948281214 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Jatropha curcas]
20 Hb_000174_270 0.0951822147 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_012490_090 Hb_012490_090 Hb_000215_140 Hb_000215_140 Hb_012490_090--Hb_000215_140 Hb_000313_120 Hb_000313_120 Hb_012490_090--Hb_000313_120 Hb_146224_010 Hb_146224_010 Hb_012490_090--Hb_146224_010 Hb_002260_050 Hb_002260_050 Hb_012490_090--Hb_002260_050 Hb_001217_050 Hb_001217_050 Hb_012490_090--Hb_001217_050 Hb_013358_010 Hb_013358_010 Hb_012490_090--Hb_013358_010 Hb_000412_010 Hb_000412_010 Hb_000215_140--Hb_000412_010 Hb_000215_140--Hb_000313_120 Hb_000720_130 Hb_000720_130 Hb_000215_140--Hb_000720_130 Hb_000230_260 Hb_000230_260 Hb_000215_140--Hb_000230_260 Hb_001963_100 Hb_001963_100 Hb_000215_140--Hb_001963_100 Hb_000789_250 Hb_000789_250 Hb_000313_120--Hb_000789_250 Hb_003058_260 Hb_003058_260 Hb_000313_120--Hb_003058_260 Hb_001628_070 Hb_001628_070 Hb_000313_120--Hb_001628_070 Hb_000317_370 Hb_000317_370 Hb_000313_120--Hb_000317_370 Hb_000313_120--Hb_000412_010 Hb_001001_150 Hb_001001_150 Hb_146224_010--Hb_001001_150 Hb_146224_010--Hb_000313_120 Hb_146224_010--Hb_002260_050 Hb_000115_160 Hb_000115_160 Hb_146224_010--Hb_000115_160 Hb_146224_010--Hb_000215_140 Hb_001322_130 Hb_001322_130 Hb_002260_050--Hb_001322_130 Hb_004410_120 Hb_004410_120 Hb_002260_050--Hb_004410_120 Hb_000174_290 Hb_000174_290 Hb_002260_050--Hb_000174_290 Hb_002260_050--Hb_013358_010 Hb_004553_030 Hb_004553_030 Hb_002260_050--Hb_004553_030 Hb_000107_490 Hb_000107_490 Hb_001217_050--Hb_000107_490 Hb_001217_050--Hb_000313_120 Hb_010222_070 Hb_010222_070 Hb_001217_050--Hb_010222_070 Hb_000245_040 Hb_000245_040 Hb_001217_050--Hb_000245_040 Hb_004030_080 Hb_004030_080 Hb_001217_050--Hb_004030_080 Hb_000599_190 Hb_000599_190 Hb_001217_050--Hb_000599_190 Hb_013358_010--Hb_004410_120 Hb_143766_060 Hb_143766_060 Hb_013358_010--Hb_143766_060 Hb_000260_070 Hb_000260_070 Hb_013358_010--Hb_000260_070 Hb_013358_010--Hb_001628_070 Hb_013358_010--Hb_000174_290 Hb_013358_010--Hb_001217_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.5134 28.7059 13.2864 16.7323 24.7939 17.3522
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.4837 11.8512 31.5703 19.4238 20.7364

CAGE analysis