Hb_012490_100

Information

Type -
Description -
Location Contig12490: 99751-102690
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012490_100 0.0 - - -
2 Hb_000181_150 0.2251428104 - - hypothetical protein PHAVU_011G1647000g, partial [Phaseolus vulgaris]
3 Hb_002205_060 0.2398510455 - - -
4 Hb_006960_010 0.2645118719 - - conserved hypothetical protein [Ricinus communis]
5 Hb_130367_010 0.2695313531 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 [Jatropha curcas]
6 Hb_000656_090 0.2812728083 - - PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]
7 Hb_009119_020 0.2812765451 - - hypothetical protein CISIN_1g033708mg [Citrus sinensis]
8 Hb_000329_560 0.2831390111 - - conserved hypothetical protein [Ricinus communis]
9 Hb_012627_020 0.2844296901 - - PHYTOCHROME AND FLOWERING TIME 1 family protein [Populus trichocarpa]
10 Hb_002815_050 0.285788391 - - PREDICTED: succinate-semialdehyde dehydrogenase, mitochondrial [Populus euphratica]
11 Hb_115477_010 0.2884896845 - - Protein dom-3, putative [Ricinus communis]
12 Hb_005679_070 0.2887214016 - - hypothetical protein M569_07741, partial [Genlisea aurea]
13 Hb_008447_030 0.2909248558 - - -
14 Hb_026228_010 0.2911401192 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000160_160 0.2936689285 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Jatropha curcas]
16 Hb_000810_020 0.2945098872 - - -
17 Hb_000080_180 0.301491434 - - -
18 Hb_001260_030 0.3031396607 - - conserved hypothetical protein [Ricinus communis]
19 Hb_009119_040 0.3034544545 - - PREDICTED: tobamovirus multiplication protein 2A [Jatropha curcas]
20 Hb_002783_060 0.3062336533 - - PREDICTED: uncharacterized protein LOC105635325 [Jatropha curcas]

Gene co-expression network

sample Hb_012490_100 Hb_012490_100 Hb_000181_150 Hb_000181_150 Hb_012490_100--Hb_000181_150 Hb_002205_060 Hb_002205_060 Hb_012490_100--Hb_002205_060 Hb_006960_010 Hb_006960_010 Hb_012490_100--Hb_006960_010 Hb_130367_010 Hb_130367_010 Hb_012490_100--Hb_130367_010 Hb_000656_090 Hb_000656_090 Hb_012490_100--Hb_000656_090 Hb_009119_020 Hb_009119_020 Hb_012490_100--Hb_009119_020 Hb_177103_010 Hb_177103_010 Hb_000181_150--Hb_177103_010 Hb_005679_070 Hb_005679_070 Hb_000181_150--Hb_005679_070 Hb_002815_050 Hb_002815_050 Hb_000181_150--Hb_002815_050 Hb_032258_020 Hb_032258_020 Hb_000181_150--Hb_032258_020 Hb_000329_560 Hb_000329_560 Hb_000181_150--Hb_000329_560 Hb_000160_160 Hb_000160_160 Hb_000181_150--Hb_000160_160 Hb_002783_060 Hb_002783_060 Hb_002205_060--Hb_002783_060 Hb_000810_020 Hb_000810_020 Hb_002205_060--Hb_000810_020 Hb_002205_060--Hb_005679_070 Hb_001260_030 Hb_001260_030 Hb_002205_060--Hb_001260_030 Hb_002205_060--Hb_000181_150 Hb_026228_010 Hb_026228_010 Hb_002205_060--Hb_026228_010 Hb_141296_010 Hb_141296_010 Hb_006960_010--Hb_141296_010 Hb_000928_050 Hb_000928_050 Hb_006960_010--Hb_000928_050 Hb_006960_010--Hb_009119_020 Hb_004244_010 Hb_004244_010 Hb_006960_010--Hb_004244_010 Hb_138462_010 Hb_138462_010 Hb_006960_010--Hb_138462_010 Hb_022891_010 Hb_022891_010 Hb_130367_010--Hb_022891_010 Hb_006910_050 Hb_006910_050 Hb_130367_010--Hb_006910_050 Hb_130367_010--Hb_002815_050 Hb_007188_030 Hb_007188_030 Hb_130367_010--Hb_007188_030 Hb_003030_040 Hb_003030_040 Hb_130367_010--Hb_003030_040 Hb_001089_080 Hb_001089_080 Hb_130367_010--Hb_001089_080 Hb_008447_030 Hb_008447_030 Hb_000656_090--Hb_008447_030 Hb_012627_020 Hb_012627_020 Hb_000656_090--Hb_012627_020 Hb_000656_090--Hb_000160_160 Hb_003030_030 Hb_003030_030 Hb_000656_090--Hb_003030_030 Hb_008447_040 Hb_008447_040 Hb_000656_090--Hb_008447_040 Hb_026745_020 Hb_026745_020 Hb_000656_090--Hb_026745_020 Hb_007333_040 Hb_007333_040 Hb_009119_020--Hb_007333_040 Hb_019053_010 Hb_019053_010 Hb_009119_020--Hb_019053_010 Hb_115477_010 Hb_115477_010 Hb_009119_020--Hb_115477_010 Hb_106415_010 Hb_106415_010 Hb_009119_020--Hb_106415_010 Hb_051437_010 Hb_051437_010 Hb_009119_020--Hb_051437_010 Hb_033385_010 Hb_033385_010 Hb_009119_020--Hb_033385_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.428247 3.02789 1.21802 6.79011
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.09683 0 1.70582 1.21933 2.44528

CAGE analysis