Hb_012490_110

Information

Type -
Description -
Location Contig12490: 112308-116067
Sequence    

Annotation

kegg
ID rcu:RCOM_1046270
description hypothetical protein
nr
ID XP_012076997.1
description PREDICTED: uncharacterized membrane protein C776.05 [Jatropha curcas]
swissprot
ID O94673
description Uncharacterized membrane protein C776.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC776.05 PE=4 SV=2
trembl
ID A0A067KPY2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07450 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07580: 112266-112473 , PASA_asmbl_07581: 114588-115932
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012490_110 0.0 - - PREDICTED: uncharacterized membrane protein C776.05 [Jatropha curcas]
2 Hb_038862_010 0.2001678766 - - PREDICTED: uncharacterized protein LOC104883809 [Beta vulgaris subsp. vulgaris]
3 Hb_000566_180 0.2138798087 transcription factor TF Family: M-type PREDICTED: MADS-box transcription factor 7-like [Jatropha curcas]
4 Hb_001050_020 0.2167736345 - - -
5 Hb_004878_010 0.2200276834 - - -
6 Hb_002636_040 0.222486604 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH49 isoform X1 [Jatropha curcas]
7 Hb_002559_030 0.2316602769 - - oxidoreductase, putative [Ricinus communis]
8 Hb_001146_050 0.2324167488 - - -
9 Hb_000366_020 0.2350876367 - - -
10 Hb_006422_020 0.2373752818 - - PREDICTED: uncharacterized protein LOC105649338 [Jatropha curcas]
11 Hb_007317_090 0.238779565 - - PREDICTED: glucan endo-1,3-beta-glucosidase 14 [Jatropha curcas]
12 Hb_000579_030 0.2420521577 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 3 [Jatropha curcas]
13 Hb_006422_030 0.242062698 - - -
14 Hb_017098_010 0.2429284031 - - ABC transporter family protein [Hevea brasiliensis]
15 Hb_000492_080 0.244408356 - - PREDICTED: probable sucrose-phosphate synthase 1 [Jatropha curcas]
16 Hb_086765_010 0.2467900616 - - PREDICTED: nitrile-specifier protein 5-like [Jatropha curcas]
17 Hb_003053_050 0.2484638662 - - PREDICTED: putative phospholipid-transporting ATPase 8 [Jatropha curcas]
18 Hb_000261_400 0.2489248869 - - hypothetical protein JCGZ_01125 [Jatropha curcas]
19 Hb_050034_010 0.2492189538 - - PREDICTED: cullin-1 [Jatropha curcas]
20 Hb_000424_150 0.2519084627 - - PREDICTED: copper transporter 5.1-like [Jatropha curcas]

Gene co-expression network

sample Hb_012490_110 Hb_012490_110 Hb_038862_010 Hb_038862_010 Hb_012490_110--Hb_038862_010 Hb_000566_180 Hb_000566_180 Hb_012490_110--Hb_000566_180 Hb_001050_020 Hb_001050_020 Hb_012490_110--Hb_001050_020 Hb_004878_010 Hb_004878_010 Hb_012490_110--Hb_004878_010 Hb_002636_040 Hb_002636_040 Hb_012490_110--Hb_002636_040 Hb_002559_030 Hb_002559_030 Hb_012490_110--Hb_002559_030 Hb_136880_010 Hb_136880_010 Hb_038862_010--Hb_136880_010 Hb_038862_010--Hb_004878_010 Hb_000757_020 Hb_000757_020 Hb_038862_010--Hb_000757_020 Hb_155150_010 Hb_155150_010 Hb_038862_010--Hb_155150_010 Hb_012539_030 Hb_012539_030 Hb_038862_010--Hb_012539_030 Hb_005271_230 Hb_005271_230 Hb_000566_180--Hb_005271_230 Hb_057796_010 Hb_057796_010 Hb_000566_180--Hb_057796_010 Hb_001404_080 Hb_001404_080 Hb_000566_180--Hb_001404_080 Hb_006274_040 Hb_006274_040 Hb_000566_180--Hb_006274_040 Hb_050034_010 Hb_050034_010 Hb_000566_180--Hb_050034_010 Hb_000920_290 Hb_000920_290 Hb_001050_020--Hb_000920_290 Hb_153258_020 Hb_153258_020 Hb_001050_020--Hb_153258_020 Hb_001050_050 Hb_001050_050 Hb_001050_020--Hb_001050_050 Hb_004116_180 Hb_004116_180 Hb_001050_020--Hb_004116_180 Hb_005754_030 Hb_005754_030 Hb_001050_020--Hb_005754_030 Hb_024698_010 Hb_024698_010 Hb_001050_020--Hb_024698_010 Hb_001146_050 Hb_001146_050 Hb_004878_010--Hb_001146_050 Hb_007718_020 Hb_007718_020 Hb_004878_010--Hb_007718_020 Hb_004409_030 Hb_004409_030 Hb_004878_010--Hb_004409_030 Hb_004878_010--Hb_005271_230 Hb_003632_030 Hb_003632_030 Hb_002636_040--Hb_003632_030 Hb_008092_060 Hb_008092_060 Hb_002636_040--Hb_008092_060 Hb_005288_110 Hb_005288_110 Hb_002636_040--Hb_005288_110 Hb_001396_240 Hb_001396_240 Hb_002636_040--Hb_001396_240 Hb_004466_050 Hb_004466_050 Hb_002636_040--Hb_004466_050 Hb_001408_030 Hb_001408_030 Hb_002636_040--Hb_001408_030 Hb_014361_090 Hb_014361_090 Hb_002559_030--Hb_014361_090 Hb_003006_090 Hb_003006_090 Hb_002559_030--Hb_003006_090 Hb_011828_010 Hb_011828_010 Hb_002559_030--Hb_011828_010 Hb_000056_110 Hb_000056_110 Hb_002559_030--Hb_000056_110 Hb_000071_160 Hb_000071_160 Hb_002559_030--Hb_000071_160 Hb_002685_220 Hb_002685_220 Hb_002559_030--Hb_002685_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.16799 3.31953 0.761298 5.22954 0.319391 5.23667
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0581719 0.228834 0.258551 1.94398 7.29495

CAGE analysis