Hb_012496_020

Information

Type -
Description -
Location Contig12496: 6787-10088
Sequence    

Annotation

kegg
ID rcu:RCOM_0574930
description receptor serine/threonine kinase, putative
nr
ID XP_002529765.1
description receptor serine/threonine kinase, putative [Ricinus communis]
swissprot
ID Q9LEA3
description Putative L-type lectin-domain containing receptor kinase V.6 OS=Arabidopsis thaliana GN=LECRK56 PE=3 SV=3
trembl
ID B9SUU6
description Receptor serine/threonine kinase, putative OS=Ricinus communis GN=RCOM_0574930 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07589: 6899-8368
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012496_020 0.0 - - receptor serine/threonine kinase, putative [Ricinus communis]
2 Hb_186995_010 0.0857704859 - - hypothetical protein POPTR_0012s01755g [Populus trichocarpa]
3 Hb_167206_010 0.0859030941 - - hypothetical protein JCGZ_04542 [Jatropha curcas]
4 Hb_000438_200 0.0935041402 - - PREDICTED: protein NRT1/ PTR FAMILY 5.1 [Jatropha curcas]
5 Hb_182167_010 0.1050956478 - - hypothetical protein PHAVU_001G0486001g, partial [Phaseolus vulgaris]
6 Hb_115962_010 0.1062100409 - - receptor serine/threonine kinase, putative [Ricinus communis]
7 Hb_005381_010 0.1127539153 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH35 isoform X1 [Jatropha curcas]
8 Hb_009252_090 0.1140790321 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
9 Hb_001660_080 0.114600436 - - hypothetical protein JCGZ_14829 [Jatropha curcas]
10 Hb_003060_150 0.1153396588 - - UDP-glucosyltransferase, putative [Ricinus communis]
11 Hb_002301_340 0.1161759782 transcription factor TF Family: B3 leafy cotyledon 2 [Ricinus communis]
12 Hb_000035_140 0.1251254017 transcription factor TF Family: WRKY putative WRKY transcription factor family protein [Populus trichocarpa]
13 Hb_004553_040 0.1261693892 - - PREDICTED: protein YLS9-like [Jatropha curcas]
14 Hb_189208_060 0.1278182764 - - PREDICTED: two-pore potassium channel 5 [Jatropha curcas]
15 Hb_000069_530 0.1308785808 transcription factor TF Family: WRKY hypothetical protein POPTR_0014s09190g [Populus trichocarpa]
16 Hb_018563_010 0.1353167429 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
17 Hb_001160_050 0.1379715944 - - PREDICTED: long-chain-alcohol oxidase FAO1 [Jatropha curcas]
18 Hb_026016_010 0.1383457308 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
19 Hb_006873_010 0.1385736519 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
20 Hb_121540_010 0.139810221 - - PREDICTED: UDP-glycosyltransferase 88A1-like [Jatropha curcas]

Gene co-expression network

sample Hb_012496_020 Hb_012496_020 Hb_186995_010 Hb_186995_010 Hb_012496_020--Hb_186995_010 Hb_167206_010 Hb_167206_010 Hb_012496_020--Hb_167206_010 Hb_000438_200 Hb_000438_200 Hb_012496_020--Hb_000438_200 Hb_182167_010 Hb_182167_010 Hb_012496_020--Hb_182167_010 Hb_115962_010 Hb_115962_010 Hb_012496_020--Hb_115962_010 Hb_005381_010 Hb_005381_010 Hb_012496_020--Hb_005381_010 Hb_186995_010--Hb_167206_010 Hb_001277_370 Hb_001277_370 Hb_186995_010--Hb_001277_370 Hb_004553_040 Hb_004553_040 Hb_186995_010--Hb_004553_040 Hb_000319_010 Hb_000319_010 Hb_186995_010--Hb_000319_010 Hb_006873_010 Hb_006873_010 Hb_186995_010--Hb_006873_010 Hb_167206_010--Hb_004553_040 Hb_167206_010--Hb_001277_370 Hb_018563_010 Hb_018563_010 Hb_167206_010--Hb_018563_010 Hb_167206_010--Hb_000319_010 Hb_000438_200--Hb_115962_010 Hb_000438_200--Hb_018563_010 Hb_000049_030 Hb_000049_030 Hb_000438_200--Hb_000049_030 Hb_000438_200--Hb_167206_010 Hb_001025_140 Hb_001025_140 Hb_000438_200--Hb_001025_140 Hb_182167_010--Hb_005381_010 Hb_003060_150 Hb_003060_150 Hb_182167_010--Hb_003060_150 Hb_000069_530 Hb_000069_530 Hb_182167_010--Hb_000069_530 Hb_121540_010 Hb_121540_010 Hb_182167_010--Hb_121540_010 Hb_001153_250 Hb_001153_250 Hb_182167_010--Hb_001153_250 Hb_115962_010--Hb_000049_030 Hb_000035_140 Hb_000035_140 Hb_115962_010--Hb_000035_140 Hb_009421_090 Hb_009421_090 Hb_115962_010--Hb_009421_090 Hb_115962_010--Hb_001025_140 Hb_005381_010--Hb_000069_530 Hb_005381_010--Hb_121540_010 Hb_005381_010--Hb_003060_150 Hb_001660_080 Hb_001660_080 Hb_005381_010--Hb_001660_080 Hb_077694_010 Hb_077694_010 Hb_005381_010--Hb_077694_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.814937 1.3089 0.518691 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.22593

CAGE analysis