Hb_012498_010

Information

Type -
Description -
Location Contig12498: 448-7060
Sequence    

Annotation

kegg
ID rcu:RCOM_1213600
description mitochondrial import inner membrane translocase subunit tim44, putative
nr
ID XP_012085319.1
description PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]
swissprot
ID Q5XF06
description Mitochondrial import inner membrane translocase subunit TIM44-2 OS=Arabidopsis thaliana GN=TIM44-2 PE=1 SV=1
trembl
ID A0A067JRL5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17690 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012498_010 0.0 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]
2 Hb_004109_080 0.0463038627 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X1 [Populus euphratica]
3 Hb_003683_020 0.0474824707 - - serine/threonine protein kinase, putative [Ricinus communis]
4 Hb_005291_050 0.0492515708 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6-like isoform X1 [Jatropha curcas]
5 Hb_000156_010 0.0545267391 - - phospho-n-acetylmuramoyl-pentapeptide-transferase, putative [Ricinus communis]
6 Hb_004567_090 0.0585877083 - - PREDICTED: GPI transamidase component PIG-T [Jatropha curcas]
7 Hb_010142_020 0.0596441844 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001500_140 0.0605995347 - - pelota, putative [Ricinus communis]
9 Hb_003528_030 0.062736526 - - PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Jatropha curcas]
10 Hb_000260_350 0.0642771802 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002989_020 0.0642896689 - - PREDICTED: uncharacterized protein LOC105630013 isoform X2 [Jatropha curcas]
12 Hb_002909_140 0.0646775954 - - PREDICTED: D-xylose-proton symporter-like 2 [Jatropha curcas]
13 Hb_008970_030 0.0648953221 - - arf gtpase-activating protein, putative [Ricinus communis]
14 Hb_013726_090 0.0649871866 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
15 Hb_003025_100 0.0656770487 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
16 Hb_000138_100 0.0657862106 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
17 Hb_000159_090 0.0665409931 - - hypothetical protein POPTR_0015s153201g, partial [Populus trichocarpa]
18 Hb_007481_010 0.0682611935 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
19 Hb_000140_290 0.0682897033 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 [Populus euphratica]
20 Hb_013399_020 0.0685784626 - - PREDICTED: developmentally-regulated G-protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_012498_010 Hb_012498_010 Hb_004109_080 Hb_004109_080 Hb_012498_010--Hb_004109_080 Hb_003683_020 Hb_003683_020 Hb_012498_010--Hb_003683_020 Hb_005291_050 Hb_005291_050 Hb_012498_010--Hb_005291_050 Hb_000156_010 Hb_000156_010 Hb_012498_010--Hb_000156_010 Hb_004567_090 Hb_004567_090 Hb_012498_010--Hb_004567_090 Hb_010142_020 Hb_010142_020 Hb_012498_010--Hb_010142_020 Hb_004109_080--Hb_004567_090 Hb_004109_080--Hb_005291_050 Hb_000340_530 Hb_000340_530 Hb_004109_080--Hb_000340_530 Hb_002263_020 Hb_002263_020 Hb_004109_080--Hb_002263_020 Hb_000406_200 Hb_000406_200 Hb_004109_080--Hb_000406_200 Hb_003683_020--Hb_010142_020 Hb_013399_020 Hb_013399_020 Hb_003683_020--Hb_013399_020 Hb_003528_030 Hb_003528_030 Hb_003683_020--Hb_003528_030 Hb_000159_090 Hb_000159_090 Hb_003683_020--Hb_000159_090 Hb_000260_330 Hb_000260_330 Hb_003683_020--Hb_000260_330 Hb_001902_030 Hb_001902_030 Hb_005291_050--Hb_001902_030 Hb_005291_050--Hb_000156_010 Hb_005291_050--Hb_002263_020 Hb_000254_090 Hb_000254_090 Hb_005291_050--Hb_000254_090 Hb_011037_030 Hb_011037_030 Hb_000156_010--Hb_011037_030 Hb_003750_050 Hb_003750_050 Hb_000156_010--Hb_003750_050 Hb_054865_150 Hb_054865_150 Hb_000156_010--Hb_054865_150 Hb_105328_020 Hb_105328_020 Hb_000156_010--Hb_105328_020 Hb_002110_190 Hb_002110_190 Hb_004567_090--Hb_002110_190 Hb_007479_040 Hb_007479_040 Hb_004567_090--Hb_007479_040 Hb_003411_040 Hb_003411_040 Hb_004567_090--Hb_003411_040 Hb_004567_090--Hb_054865_150 Hb_011063_050 Hb_011063_050 Hb_010142_020--Hb_011063_050 Hb_002989_020 Hb_002989_020 Hb_010142_020--Hb_002989_020 Hb_000614_240 Hb_000614_240 Hb_010142_020--Hb_000614_240 Hb_001500_140 Hb_001500_140 Hb_010142_020--Hb_001500_140 Hb_000140_290 Hb_000140_290 Hb_010142_020--Hb_000140_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.71384 8.53597 10.7124 17.1352 10.6371 14.3721
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.71073 10.875 13.6533 14.5725 13.0872

CAGE analysis