Hb_012500_010

Information

Type -
Description -
Location Contig12500: 499-1164
Sequence    

Annotation

kegg
ID rcu:RCOM_0136880
description Ran GTPase binding protein, putative
nr
ID XP_002526126.1
description Ran GTPase binding protein, putative [Ricinus communis]
swissprot
ID Q17TI5
description Protein BREVIS RADIX OS=Arabidopsis thaliana GN=BRX PE=1 SV=2
trembl
ID B9SJF7
description Ran GTPase binding protein, putative OS=Ricinus communis GN=RCOM_0136880 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012500_010 0.0 - - Ran GTPase binding protein, putative [Ricinus communis]
2 Hb_009742_010 0.2379250357 - - -
3 Hb_184798_040 0.3076478474 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
4 Hb_085922_010 0.3258941004 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
5 Hb_000504_250 0.3397581715 - - -
6 Hb_137543_010 0.3410372415 - - -
7 Hb_155880_010 0.341299462 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
8 Hb_003206_040 0.3434733753 - - Auxin efflux carrier component, putative [Ricinus communis]
9 Hb_141990_060 0.3437623174 - - -
10 Hb_004409_010 0.3445357352 - - -
11 Hb_010979_010 0.3446401558 - - -
12 Hb_021470_010 0.3458931615 - - polyprotein [Citrus endogenous pararetrovirus]
13 Hb_034569_020 0.345893997 - - -
14 Hb_030449_010 0.3480807502 - - -
15 Hb_180003_010 0.348461459 - - PREDICTED: uncharacterized protein LOC105647154 [Jatropha curcas]
16 Hb_001904_040 0.3486989837 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
17 Hb_096257_010 0.3518121207 - - -
18 Hb_000894_050 0.3520913467 - - -
19 Hb_011113_020 0.3675681878 - - hypothetical protein CICLE_v10018209mg [Citrus clementina]
20 Hb_000457_040 0.3732994202 - - -

Gene co-expression network

sample Hb_012500_010 Hb_012500_010 Hb_009742_010 Hb_009742_010 Hb_012500_010--Hb_009742_010 Hb_184798_040 Hb_184798_040 Hb_012500_010--Hb_184798_040 Hb_085922_010 Hb_085922_010 Hb_012500_010--Hb_085922_010 Hb_000504_250 Hb_000504_250 Hb_012500_010--Hb_000504_250 Hb_137543_010 Hb_137543_010 Hb_012500_010--Hb_137543_010 Hb_155880_010 Hb_155880_010 Hb_012500_010--Hb_155880_010 Hb_034569_020 Hb_034569_020 Hb_009742_010--Hb_034569_020 Hb_000922_310 Hb_000922_310 Hb_009742_010--Hb_000922_310 Hb_004899_280 Hb_004899_280 Hb_009742_010--Hb_004899_280 Hb_131949_010 Hb_131949_010 Hb_009742_010--Hb_131949_010 Hb_009742_010--Hb_184798_040 Hb_184798_040--Hb_131949_010 Hb_003362_060 Hb_003362_060 Hb_184798_040--Hb_003362_060 Hb_000171_040 Hb_000171_040 Hb_184798_040--Hb_000171_040 Hb_184798_040--Hb_034569_020 Hb_184798_040--Hb_004899_280 Hb_085922_010--Hb_000504_250 Hb_085922_010--Hb_155880_010 Hb_003206_040 Hb_003206_040 Hb_085922_010--Hb_003206_040 Hb_141990_060 Hb_141990_060 Hb_085922_010--Hb_141990_060 Hb_004409_010 Hb_004409_010 Hb_085922_010--Hb_004409_010 Hb_021470_010 Hb_021470_010 Hb_085922_010--Hb_021470_010 Hb_000504_250--Hb_155880_010 Hb_000504_250--Hb_003206_040 Hb_000504_250--Hb_141990_060 Hb_000504_250--Hb_004409_010 Hb_000504_250--Hb_021470_010 Hb_004534_020 Hb_004534_020 Hb_137543_010--Hb_004534_020 Hb_002609_100 Hb_002609_100 Hb_137543_010--Hb_002609_100 Hb_007382_040 Hb_007382_040 Hb_137543_010--Hb_007382_040 Hb_001301_190 Hb_001301_190 Hb_137543_010--Hb_001301_190 Hb_009355_030 Hb_009355_030 Hb_137543_010--Hb_009355_030 Hb_166786_030 Hb_166786_030 Hb_137543_010--Hb_166786_030 Hb_155880_010--Hb_003206_040 Hb_155880_010--Hb_141990_060 Hb_155880_010--Hb_004409_010 Hb_155880_010--Hb_021470_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.397167 0.171943 0 0 0.0483481 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0878384 0 0 0

CAGE analysis