Hb_012505_010

Information

Type -
Description -
Location Contig12505: 15993-24550
Sequence    

Annotation

kegg
ID rcu:RCOM_1416820
description mak, putative (EC:2.7.11.22)
nr
ID XP_002531076.1
description mak, putative [Ricinus communis]
swissprot
ID P43294
description Serine/threonine-protein kinase MHK OS=Arabidopsis thaliana GN=MHK PE=2 SV=2
trembl
ID B9SYK7
description Mak, putative OS=Ricinus communis GN=RCOM_1416820 PE=4 SV=1
Gene Ontology
ID GO:0004693
description serine threonine-protein kinase mhk isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07645: 16007-24494 , PASA_asmbl_07648: 20586-20691
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012505_010 0.0 - - mak, putative [Ricinus communis]
2 Hb_001277_070 0.0667932952 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
3 Hb_004375_140 0.0831642375 - - PREDICTED: nicotinamide adenine dinucleotide transporter 1, chloroplastic [Jatropha curcas]
4 Hb_129204_030 0.0852836301 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
5 Hb_000240_090 0.0920929089 - - Rab5 [Hevea brasiliensis]
6 Hb_000608_370 0.0931153722 - - acyl-carrier-protein [Triadica sebifera]
7 Hb_001140_060 0.0966788855 - - PREDICTED: ADP-ribosylation factor-related protein 1 [Prunus mume]
8 Hb_001616_030 0.09857255 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Jatropha curcas]
9 Hb_021409_030 0.0989028567 - - PREDICTED: serine/threonine-protein kinase WNK8 isoform X3 [Jatropha curcas]
10 Hb_031862_110 0.1013585541 - - calcium-dependent protein kinase [Hevea brasiliensis]
11 Hb_000431_010 0.1023383074 - - hypothetical protein POPTR_0016s05340g [Populus trichocarpa]
12 Hb_000302_220 0.1026121856 - - PREDICTED: origin of replication complex subunit 5 isoform X1 [Jatropha curcas]
13 Hb_020301_040 0.1032434811 - - PREDICTED: mitochondrial substrate carrier family protein P [Jatropha curcas]
14 Hb_000479_010 0.1038566972 - - PREDICTED: 40S ribosomal protein S19-3-like [Eucalyptus grandis]
15 Hb_001300_040 0.1040076616 - - PREDICTED: uncharacterized protein LOC105642466 [Jatropha curcas]
16 Hb_003581_150 0.1050120652 - - hypothetical protein CICLE_v10032366mg [Citrus clementina]
17 Hb_000563_250 0.106518667 - - PREDICTED: uncharacterized protein LOC105643472 [Jatropha curcas]
18 Hb_002876_120 0.1067438155 - - PREDICTED: protein-tyrosine-phosphatase PTP1 isoform X1 [Jatropha curcas]
19 Hb_002784_120 0.1080345306 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
20 Hb_003632_010 0.1086557804 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_012505_010 Hb_012505_010 Hb_001277_070 Hb_001277_070 Hb_012505_010--Hb_001277_070 Hb_004375_140 Hb_004375_140 Hb_012505_010--Hb_004375_140 Hb_129204_030 Hb_129204_030 Hb_012505_010--Hb_129204_030 Hb_000240_090 Hb_000240_090 Hb_012505_010--Hb_000240_090 Hb_000608_370 Hb_000608_370 Hb_012505_010--Hb_000608_370 Hb_001140_060 Hb_001140_060 Hb_012505_010--Hb_001140_060 Hb_001277_070--Hb_000608_370 Hb_011224_110 Hb_011224_110 Hb_001277_070--Hb_011224_110 Hb_001277_070--Hb_129204_030 Hb_003581_150 Hb_003581_150 Hb_001277_070--Hb_003581_150 Hb_153112_020 Hb_153112_020 Hb_001277_070--Hb_153112_020 Hb_021409_030 Hb_021409_030 Hb_004375_140--Hb_021409_030 Hb_000103_010 Hb_000103_010 Hb_004375_140--Hb_000103_010 Hb_001085_120 Hb_001085_120 Hb_004375_140--Hb_001085_120 Hb_004375_140--Hb_129204_030 Hb_004586_320 Hb_004586_320 Hb_004375_140--Hb_004586_320 Hb_004375_140--Hb_000608_370 Hb_129204_030--Hb_000608_370 Hb_000167_140 Hb_000167_140 Hb_129204_030--Hb_000167_140 Hb_001047_230 Hb_001047_230 Hb_129204_030--Hb_001047_230 Hb_129204_030--Hb_021409_030 Hb_129204_030--Hb_000240_090 Hb_000120_680 Hb_000120_680 Hb_000240_090--Hb_000120_680 Hb_004635_100 Hb_004635_100 Hb_000240_090--Hb_004635_100 Hb_000347_410 Hb_000347_410 Hb_000240_090--Hb_000347_410 Hb_029866_020 Hb_029866_020 Hb_000240_090--Hb_029866_020 Hb_000240_090--Hb_021409_030 Hb_007416_030 Hb_007416_030 Hb_000608_370--Hb_007416_030 Hb_000608_370--Hb_001047_230 Hb_000788_090 Hb_000788_090 Hb_000608_370--Hb_000788_090 Hb_000258_170 Hb_000258_170 Hb_000608_370--Hb_000258_170 Hb_002454_030 Hb_002454_030 Hb_000608_370--Hb_002454_030 Hb_006117_070 Hb_006117_070 Hb_001140_060--Hb_006117_070 Hb_012753_160 Hb_012753_160 Hb_001140_060--Hb_012753_160 Hb_008300_010 Hb_008300_010 Hb_001140_060--Hb_008300_010 Hb_000479_010 Hb_000479_010 Hb_001140_060--Hb_000479_010 Hb_101705_030 Hb_101705_030 Hb_001140_060--Hb_101705_030 Hb_008878_030 Hb_008878_030 Hb_001140_060--Hb_008878_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
61.3538 13.8661 42.8588 31.1172 44.7837 34.4276
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
77.8771 116.388 117.32 19.3563 31.0908

CAGE analysis