Hb_012506_040

Information

Type transcription factor
Description TF Family: DDT
Location Contig12506: 58160-66713
Sequence    

Annotation

kegg
ID pop:POPTR_0004s20090g
description hypothetical protein
nr
ID XP_012076177.1
description PREDICTED: uncharacterized protein LOC105637346 [Jatropha curcas]
swissprot
ID Q12830
description Nucleosome-remodeling factor subunit BPTF OS=Homo sapiens GN=BPTF PE=1 SV=3
trembl
ID A0A067KE20
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11240 PE=4 SV=1
Gene Ontology
ID GO:0008270
description chromodomain-helicase-dna-binding protein mi- isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07656: 57944-64704 , PASA_asmbl_07657: 60106-60453 , PASA_asmbl_07658: 64975-65309 , PASA_asmbl_07659: 65318-66708
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012506_040 0.0 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105637346 [Jatropha curcas]
2 Hb_000465_280 0.0569067962 - - PREDICTED: pentatricopeptide repeat-containing protein At5g47360 [Jatropha curcas]
3 Hb_000170_130 0.0685338678 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH2 [Jatropha curcas]
4 Hb_002686_090 0.0751726303 - - PREDICTED: pentatricopeptide repeat-containing protein At4g13650 [Jatropha curcas]
5 Hb_001865_070 0.0804965275 - - PREDICTED: uncharacterized protein LOC105647937 isoform X1 [Jatropha curcas]
6 Hb_004374_110 0.0830484059 - - PREDICTED: uncharacterized protein LOC105645768 [Jatropha curcas]
7 Hb_005701_130 0.0863930722 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 3 [Jatropha curcas]
8 Hb_006775_130 0.0885104983 - - PREDICTED: bidirectional sugar transporter SWEET2a-like [Jatropha curcas]
9 Hb_000204_120 0.0903559709 - - PREDICTED: uncharacterized protein LOC105639239 [Jatropha curcas]
10 Hb_011671_410 0.092801777 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
11 Hb_007763_070 0.0937420252 - - PREDICTED: pentatricopeptide repeat-containing protein At1g71460, chloroplastic [Jatropha curcas]
12 Hb_005977_070 0.0946657185 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
13 Hb_000445_090 0.0947986533 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH2 [Jatropha curcas]
14 Hb_000635_060 0.0973057677 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
15 Hb_000672_040 0.0977325161 - - PREDICTED: ENHANCER OF AG-4 protein 2 [Jatropha curcas]
16 Hb_006816_370 0.0981800178 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105647456 [Jatropha curcas]
17 Hb_004204_010 0.0990957776 - - PREDICTED: uncharacterized protein LOC105640608 [Jatropha curcas]
18 Hb_012053_090 0.0991951714 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105637346 [Jatropha curcas]
19 Hb_000484_010 0.0995005935 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 23 [Jatropha curcas]
20 Hb_000504_180 0.0998800376 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_012506_040 Hb_012506_040 Hb_000465_280 Hb_000465_280 Hb_012506_040--Hb_000465_280 Hb_000170_130 Hb_000170_130 Hb_012506_040--Hb_000170_130 Hb_002686_090 Hb_002686_090 Hb_012506_040--Hb_002686_090 Hb_001865_070 Hb_001865_070 Hb_012506_040--Hb_001865_070 Hb_004374_110 Hb_004374_110 Hb_012506_040--Hb_004374_110 Hb_005701_130 Hb_005701_130 Hb_012506_040--Hb_005701_130 Hb_006775_130 Hb_006775_130 Hb_000465_280--Hb_006775_130 Hb_007763_070 Hb_007763_070 Hb_000465_280--Hb_007763_070 Hb_000504_180 Hb_000504_180 Hb_000465_280--Hb_000504_180 Hb_009296_080 Hb_009296_080 Hb_000465_280--Hb_009296_080 Hb_000465_280--Hb_002686_090 Hb_011671_410 Hb_011671_410 Hb_000170_130--Hb_011671_410 Hb_000170_130--Hb_002686_090 Hb_002542_110 Hb_002542_110 Hb_000170_130--Hb_002542_110 Hb_006816_370 Hb_006816_370 Hb_000170_130--Hb_006816_370 Hb_062226_070 Hb_062226_070 Hb_000170_130--Hb_062226_070 Hb_000640_040 Hb_000640_040 Hb_002686_090--Hb_000640_040 Hb_002686_090--Hb_001865_070 Hb_000204_120 Hb_000204_120 Hb_002686_090--Hb_000204_120 Hb_001716_040 Hb_001716_040 Hb_002686_090--Hb_001716_040 Hb_002686_090--Hb_002542_110 Hb_007441_160 Hb_007441_160 Hb_001865_070--Hb_007441_160 Hb_005977_070 Hb_005977_070 Hb_001865_070--Hb_005977_070 Hb_000672_040 Hb_000672_040 Hb_001865_070--Hb_000672_040 Hb_005736_020 Hb_005736_020 Hb_001865_070--Hb_005736_020 Hb_001157_240 Hb_001157_240 Hb_001865_070--Hb_001157_240 Hb_002235_200 Hb_002235_200 Hb_004374_110--Hb_002235_200 Hb_006839_010 Hb_006839_010 Hb_004374_110--Hb_006839_010 Hb_004374_110--Hb_001157_240 Hb_012632_010 Hb_012632_010 Hb_004374_110--Hb_012632_010 Hb_002890_130 Hb_002890_130 Hb_004374_110--Hb_002890_130 Hb_001377_100 Hb_001377_100 Hb_004374_110--Hb_001377_100 Hb_012053_090 Hb_012053_090 Hb_005701_130--Hb_012053_090 Hb_005488_170 Hb_005488_170 Hb_005701_130--Hb_005488_170 Hb_000538_280 Hb_000538_280 Hb_005701_130--Hb_000538_280 Hb_005701_130--Hb_001377_100 Hb_001648_020 Hb_001648_020 Hb_005701_130--Hb_001648_020 Hb_002600_060 Hb_002600_060 Hb_005701_130--Hb_002600_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.85977 8.04399 3.27234 6.15516 3.82857 3.82931
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.99875 4.13159 6.87477 4.66592 12.8149

CAGE analysis