Hb_012506_070

Information

Type -
Description -
Location Contig12506: 99411-102240
Sequence    

Annotation

kegg
ID pop:POPTR_0004s20060g
description hypothetical protein
nr
ID XP_006384675.1
description hypothetical protein POPTR_0004s20060g [Populus trichocarpa]
swissprot
ID Q8L7L5
description AT-hook motif nuclear-localized protein 11 OS=Arabidopsis thaliana GN=AHL11 PE=2 SV=1
trembl
ID U5GMD3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s20060g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07673: 101769-102186
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012506_070 0.0 - - hypothetical protein POPTR_0004s20060g [Populus trichocarpa]
2 Hb_000438_140 0.0948807922 - - hypothetical protein CISIN_1g018088mg [Citrus sinensis]
3 Hb_000200_010 0.1004725484 - - PREDICTED: MATE efflux family protein 8-like [Jatropha curcas]
4 Hb_001109_050 0.1179603372 - - PREDICTED: ankyrin-1 [Jatropha curcas]
5 Hb_113853_010 0.119561391 - - 50S ribosomal protein L2, putative [Ricinus communis]
6 Hb_134849_010 0.1216884852 - - ATP synthase subunit d, putative [Ricinus communis]
7 Hb_001277_030 0.1253241704 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Nelumbo nucifera]
8 Hb_005494_010 0.1297941536 - - catalytic, putative [Ricinus communis]
9 Hb_000032_500 0.1329710344 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
10 Hb_065525_080 0.1356446222 - - PREDICTED: ubiquitin-conjugating enzyme E2 14 [Populus euphratica]
11 Hb_002218_030 0.1391576461 - - hypothetical protein B456_007G345200 [Gossypium raimondii]
12 Hb_004440_060 0.1399476896 - - aldose 1-epimerase, putative [Ricinus communis]
13 Hb_016219_030 0.1408555667 - - cytochrome P450, putative [Ricinus communis]
14 Hb_001892_030 0.1410646725 - - PREDICTED: phytanoyl-CoA dioxygenase isoform X1 [Jatropha curcas]
15 Hb_187247_020 0.1412286782 - - PREDICTED: uncharacterized protein LOC101220469 [Cucumis sativus]
16 Hb_008695_200 0.1412732102 - - Protein grpE, putative [Ricinus communis]
17 Hb_005731_160 0.1416648153 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_093666_010 0.1419325873 - - BnaC05g06620D [Brassica napus]
19 Hb_001105_040 0.1432005368 - - PREDICTED: probable plastid-lipid-associated protein 10, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_033312_010 0.1442285926 - - PREDICTED: valine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_012506_070 Hb_012506_070 Hb_000438_140 Hb_000438_140 Hb_012506_070--Hb_000438_140 Hb_000200_010 Hb_000200_010 Hb_012506_070--Hb_000200_010 Hb_001109_050 Hb_001109_050 Hb_012506_070--Hb_001109_050 Hb_113853_010 Hb_113853_010 Hb_012506_070--Hb_113853_010 Hb_134849_010 Hb_134849_010 Hb_012506_070--Hb_134849_010 Hb_001277_030 Hb_001277_030 Hb_012506_070--Hb_001277_030 Hb_016219_030 Hb_016219_030 Hb_000438_140--Hb_016219_030 Hb_008695_200 Hb_008695_200 Hb_000438_140--Hb_008695_200 Hb_004440_060 Hb_004440_060 Hb_000438_140--Hb_004440_060 Hb_002053_010 Hb_002053_010 Hb_000438_140--Hb_002053_010 Hb_000438_140--Hb_000200_010 Hb_000032_500 Hb_000032_500 Hb_000200_010--Hb_000032_500 Hb_000200_010--Hb_134849_010 Hb_003142_010 Hb_003142_010 Hb_000200_010--Hb_003142_010 Hb_001677_220 Hb_001677_220 Hb_000200_010--Hb_001677_220 Hb_001105_040 Hb_001105_040 Hb_000200_010--Hb_001105_040 Hb_005494_010 Hb_005494_010 Hb_001109_050--Hb_005494_010 Hb_000221_140 Hb_000221_140 Hb_001109_050--Hb_000221_140 Hb_033312_010 Hb_033312_010 Hb_001109_050--Hb_033312_010 Hb_012150_030 Hb_012150_030 Hb_001109_050--Hb_012150_030 Hb_001109_050--Hb_134849_010 Hb_005127_030 Hb_005127_030 Hb_001109_050--Hb_005127_030 Hb_065525_080 Hb_065525_080 Hb_113853_010--Hb_065525_080 Hb_002876_300 Hb_002876_300 Hb_113853_010--Hb_002876_300 Hb_113853_010--Hb_005494_010 Hb_093666_010 Hb_093666_010 Hb_113853_010--Hb_093666_010 Hb_009476_130 Hb_009476_130 Hb_113853_010--Hb_009476_130 Hb_021374_030 Hb_021374_030 Hb_113853_010--Hb_021374_030 Hb_003053_110 Hb_003053_110 Hb_134849_010--Hb_003053_110 Hb_134849_010--Hb_012150_030 Hb_134849_010--Hb_000032_500 Hb_002774_190 Hb_002774_190 Hb_134849_010--Hb_002774_190 Hb_134849_010--Hb_033312_010 Hb_048093_010 Hb_048093_010 Hb_134849_010--Hb_048093_010 Hb_002900_110 Hb_002900_110 Hb_001277_030--Hb_002900_110 Hb_005946_150 Hb_005946_150 Hb_001277_030--Hb_005946_150 Hb_028960_030 Hb_028960_030 Hb_001277_030--Hb_028960_030 Hb_001571_060 Hb_001571_060 Hb_001277_030--Hb_001571_060 Hb_012733_040 Hb_012733_040 Hb_001277_030--Hb_012733_040 Hb_000364_050 Hb_000364_050 Hb_001277_030--Hb_000364_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.434069 0.333744 0.882134 0.674599 0.208169 0.334336
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.698582 0.721206 0.0636797 0.619821 1.20399

CAGE analysis