Hb_012508_030

Information

Type -
Description -
Location Contig12508: 28040-33482
Sequence    

Annotation

kegg
ID rcu:RCOM_1247290
description hypothetical protein
nr
ID XP_012074919.1
description PREDICTED: uncharacterized protein LOC105636284 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KTM3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09058 PE=4 SV=1
Gene Ontology
ID GO:0005634
description peptide transporter family 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07678: 28754-30267 , PASA_asmbl_07679: 30269-33255
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012508_030 0.0 - - PREDICTED: uncharacterized protein LOC105636284 [Jatropha curcas]
2 Hb_000359_020 0.0940197597 - - amine oxidase, putative [Ricinus communis]
3 Hb_000318_190 0.0980371638 - - hypothetical protein JCGZ_04889 [Jatropha curcas]
4 Hb_019654_100 0.1146205501 - - PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Jatropha curcas]
5 Hb_003862_050 0.1146464642 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105641042 [Jatropha curcas]
6 Hb_001934_030 0.1186496797 transcription factor TF Family: HSF Heat shock factor protein, putative [Ricinus communis]
7 Hb_001439_150 0.1211733572 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15340, mitochondrial [Jatropha curcas]
8 Hb_007813_040 0.1225912467 - - PREDICTED: mediator of RNA polymerase II transcription subunit 34 isoform X2 [Jatropha curcas]
9 Hb_000175_440 0.1255370335 - - signal peptidase family protein [Populus trichocarpa]
10 Hb_002620_010 0.1312358284 - - hypothetical protein POPTR_0004s18130g [Populus trichocarpa]
11 Hb_007951_060 0.1327320668 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
12 Hb_012627_050 0.1332978589 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
13 Hb_007594_030 0.1361253741 - - PREDICTED: cucumber peeling cupredoxin-like [Jatropha curcas]
14 Hb_001005_060 0.136693792 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase MAK3 [Jatropha curcas]
15 Hb_000175_460 0.1369926729 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
16 Hb_002685_140 0.138000789 - - PREDICTED: membrin-11 [Jatropha curcas]
17 Hb_000061_370 0.1380398833 - - PREDICTED: zinc finger RNA-binding protein [Vitis vinifera]
18 Hb_002085_110 0.1381023939 - - Protein transport protein Sec61 subunit beta, putative [Ricinus communis]
19 Hb_000853_430 0.1381858296 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
20 Hb_000123_120 0.1382803495 - - actin depolymerizing factor 4 [Hevea brasiliensis]

Gene co-expression network

sample Hb_012508_030 Hb_012508_030 Hb_000359_020 Hb_000359_020 Hb_012508_030--Hb_000359_020 Hb_000318_190 Hb_000318_190 Hb_012508_030--Hb_000318_190 Hb_019654_100 Hb_019654_100 Hb_012508_030--Hb_019654_100 Hb_003862_050 Hb_003862_050 Hb_012508_030--Hb_003862_050 Hb_001934_030 Hb_001934_030 Hb_012508_030--Hb_001934_030 Hb_001439_150 Hb_001439_150 Hb_012508_030--Hb_001439_150 Hb_000359_020--Hb_001439_150 Hb_001360_040 Hb_001360_040 Hb_000359_020--Hb_001360_040 Hb_002620_010 Hb_002620_010 Hb_000359_020--Hb_002620_010 Hb_002685_140 Hb_002685_140 Hb_000359_020--Hb_002685_140 Hb_000359_020--Hb_019654_100 Hb_007813_040 Hb_007813_040 Hb_000318_190--Hb_007813_040 Hb_000318_190--Hb_002620_010 Hb_007982_080 Hb_007982_080 Hb_000318_190--Hb_007982_080 Hb_002950_100 Hb_002950_100 Hb_000318_190--Hb_002950_100 Hb_000010_400 Hb_000010_400 Hb_000318_190--Hb_000010_400 Hb_019654_100--Hb_003862_050 Hb_000754_060 Hb_000754_060 Hb_019654_100--Hb_000754_060 Hb_000120_950 Hb_000120_950 Hb_019654_100--Hb_000120_950 Hb_010795_010 Hb_010795_010 Hb_019654_100--Hb_010795_010 Hb_175338_030 Hb_175338_030 Hb_019654_100--Hb_175338_030 Hb_000436_070 Hb_000436_070 Hb_019654_100--Hb_000436_070 Hb_000175_460 Hb_000175_460 Hb_003862_050--Hb_000175_460 Hb_003862_050--Hb_007813_040 Hb_005348_140 Hb_005348_140 Hb_003862_050--Hb_005348_140 Hb_002496_030 Hb_002496_030 Hb_003862_050--Hb_002496_030 Hb_003862_050--Hb_000010_400 Hb_007154_020 Hb_007154_020 Hb_001934_030--Hb_007154_020 Hb_012627_050 Hb_012627_050 Hb_001934_030--Hb_012627_050 Hb_000853_430 Hb_000853_430 Hb_001934_030--Hb_000853_430 Hb_001005_060 Hb_001005_060 Hb_001934_030--Hb_001005_060 Hb_003069_010 Hb_003069_010 Hb_001934_030--Hb_003069_010 Hb_005186_050 Hb_005186_050 Hb_001934_030--Hb_005186_050 Hb_007951_060 Hb_007951_060 Hb_001439_150--Hb_007951_060 Hb_001439_150--Hb_002685_140 Hb_001511_020 Hb_001511_020 Hb_001439_150--Hb_001511_020 Hb_000000_080 Hb_000000_080 Hb_001439_150--Hb_000000_080 Hb_000327_120 Hb_000327_120 Hb_001439_150--Hb_000327_120 Hb_168707_030 Hb_168707_030 Hb_001439_150--Hb_168707_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.53326 3.65449 7.05342 2.71135 9.77978 4.97122
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.143 7.32927 12.2384 4.71702 0.871854

CAGE analysis