Hb_012518_080

Information

Type -
Description -
Location Contig12518: 57746-60266
Sequence    

Annotation

kegg
ID rcu:RCOM_1314040
description Glucan endo-1,3-beta-glucosidase precursor, putative (EC:3.2.1.39)
nr
ID XP_012086629.1
description PREDICTED: glucan endo-1,3-beta-glucosidase 11-like [Jatropha curcas]
swissprot
ID Q8L868
description Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis thaliana GN=At1g32860 PE=1 SV=1
trembl
ID A0A067JMN2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20377 PE=3 SV=1
Gene Ontology
ID GO:0042973
description glucan endo- -beta-glucosidase 11 isoform 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07702: 57253-60138
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012518_080 0.0 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like [Jatropha curcas]
2 Hb_000735_020 0.0657569095 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
3 Hb_002292_080 0.0815740605 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
4 Hb_001085_190 0.1004573526 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
5 Hb_000303_060 0.1009488623 - - o-methyltransferase, putative [Ricinus communis]
6 Hb_033312_070 0.1050716838 - - hypothetical protein POPTR_0017s02960g [Populus trichocarpa]
7 Hb_011918_070 0.1056951586 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
8 Hb_025787_020 0.1083088627 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
9 Hb_009767_060 0.1083666651 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
10 Hb_003935_040 0.1085655265 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP [Jatropha curcas]
11 Hb_001140_300 0.1088786194 - - PREDICTED: tubulin beta-1 chain [Cicer arietinum]
12 Hb_002272_120 0.1144862867 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
13 Hb_000984_130 0.1174224691 - - tubulin [Ornithogalum longebracteatum]
14 Hb_015934_080 0.1177754166 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
15 Hb_000003_750 0.1192582046 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
16 Hb_001287_090 0.1208924217 - - Endoglucanase 4 [Aegilops tauschii]
17 Hb_006788_110 0.120951892 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
18 Hb_000310_110 0.1214494681 - - PREDICTED: probable trehalose-phosphate phosphatase F isoform X1 [Jatropha curcas]
19 Hb_064546_010 0.1220645704 - - PREDICTED: peroxidase 3 [Jatropha curcas]
20 Hb_085962_010 0.1229258159 - - hypothetical protein POPTR_0017s11380g [Populus trichocarpa]

Gene co-expression network

sample Hb_012518_080 Hb_012518_080 Hb_000735_020 Hb_000735_020 Hb_012518_080--Hb_000735_020 Hb_002292_080 Hb_002292_080 Hb_012518_080--Hb_002292_080 Hb_001085_190 Hb_001085_190 Hb_012518_080--Hb_001085_190 Hb_000303_060 Hb_000303_060 Hb_012518_080--Hb_000303_060 Hb_033312_070 Hb_033312_070 Hb_012518_080--Hb_033312_070 Hb_011918_070 Hb_011918_070 Hb_012518_080--Hb_011918_070 Hb_000735_020--Hb_001085_190 Hb_000735_020--Hb_011918_070 Hb_000735_020--Hb_033312_070 Hb_000735_020--Hb_002292_080 Hb_006788_110 Hb_006788_110 Hb_000735_020--Hb_006788_110 Hb_001348_010 Hb_001348_010 Hb_002292_080--Hb_001348_010 Hb_000093_090 Hb_000093_090 Hb_002292_080--Hb_000093_090 Hb_000162_190 Hb_000162_190 Hb_002292_080--Hb_000162_190 Hb_003935_040 Hb_003935_040 Hb_002292_080--Hb_003935_040 Hb_001085_190--Hb_011918_070 Hb_009113_080 Hb_009113_080 Hb_001085_190--Hb_009113_080 Hb_000005_360 Hb_000005_360 Hb_001085_190--Hb_000005_360 Hb_003606_050 Hb_003606_050 Hb_001085_190--Hb_003606_050 Hb_027506_030 Hb_027506_030 Hb_000303_060--Hb_027506_030 Hb_085962_010 Hb_085962_010 Hb_000303_060--Hb_085962_010 Hb_001396_030 Hb_001396_030 Hb_000303_060--Hb_001396_030 Hb_010264_020 Hb_010264_020 Hb_000303_060--Hb_010264_020 Hb_009767_060 Hb_009767_060 Hb_000303_060--Hb_009767_060 Hb_004804_010 Hb_004804_010 Hb_000303_060--Hb_004804_010 Hb_033312_070--Hb_006788_110 Hb_033312_070--Hb_011918_070 Hb_015934_080 Hb_015934_080 Hb_033312_070--Hb_015934_080 Hb_033312_070--Hb_001085_190 Hb_000996_030 Hb_000996_030 Hb_011918_070--Hb_000996_030 Hb_000003_750 Hb_000003_750 Hb_011918_070--Hb_000003_750 Hb_005542_120 Hb_005542_120 Hb_011918_070--Hb_005542_120 Hb_000878_050 Hb_000878_050 Hb_011918_070--Hb_000878_050 Hb_004696_010 Hb_004696_010 Hb_011918_070--Hb_004696_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.264937 0.769335 9.81555 16.6619 0.0518932 0.0664493
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.124059 0.0244002 0.229268 3.33067 5.82077

CAGE analysis