Hb_012522_030

Information

Type -
Description -
Location Contig12522: 10757-26863
Sequence    

Annotation

kegg
ID rcu:RCOM_0282300
description ankyrin repeat-containing protein, putative
nr
ID XP_002533218.1
description ankyrin repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q6KAE5
description Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica GN=XBOS32 PE=2 SV=2
trembl
ID B9T4P9
description Ankyrin repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0282300 PE=4 SV=1
Gene Ontology
ID GO:0004842
description probable e3 ubiquitin-protein ligase xbos32

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07767: 10589-25748 , PASA_asmbl_07768: 10589-25743 , PASA_asmbl_07770: 12337-12593 , PASA_asmbl_07771: 11729-11881 , PASA_asmbl_07773: 26809-26941
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012522_030 0.0 - - ankyrin repeat-containing protein, putative [Ricinus communis]
2 Hb_002387_060 0.0741008555 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002326_030 0.0748861434 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein REM16-like isoform X1 [Jatropha curcas]
4 Hb_002291_030 0.0751884548 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
5 Hb_001711_030 0.0761176334 - - PREDICTED: uncharacterized protein LOC105642409 [Jatropha curcas]
6 Hb_000419_040 0.0780171146 - - chorismate synthase [Hevea brasiliensis]
7 Hb_002282_020 0.0854244359 - - PREDICTED: uncharacterized protein LOC105629828 [Jatropha curcas]
8 Hb_000861_040 0.0874747306 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Jatropha curcas]
9 Hb_002352_010 0.0914038868 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
10 Hb_000051_040 0.092166935 - - PREDICTED: uncharacterized protein LOC102597788 [Solanum tuberosum]
11 Hb_183963_020 0.0930151566 - - PREDICTED: uncharacterized protein LOC105644615 [Jatropha curcas]
12 Hb_002527_070 0.094616284 - - axonemal dynein light chain, putative [Ricinus communis]
13 Hb_002936_050 0.0962424281 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR18 isoform X2 [Jatropha curcas]
14 Hb_008695_190 0.0984626569 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]
15 Hb_171554_080 0.0996465808 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
16 Hb_007021_020 0.0997314685 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
17 Hb_007229_060 0.1003762162 - - PREDICTED: pentatricopeptide repeat-containing protein At2g44880 [Jatropha curcas]
18 Hb_000032_220 0.1008027863 - - PREDICTED: abscisic acid receptor PYL8-like isoform X1 [Jatropha curcas]
19 Hb_007047_010 0.1014843648 - - PREDICTED: expansin-A13 [Jatropha curcas]
20 Hb_001141_470 0.1022743637 - - PREDICTED: uncharacterized protein LOC101254423 [Solanum lycopersicum]

Gene co-expression network

sample Hb_012522_030 Hb_012522_030 Hb_002387_060 Hb_002387_060 Hb_012522_030--Hb_002387_060 Hb_002326_030 Hb_002326_030 Hb_012522_030--Hb_002326_030 Hb_002291_030 Hb_002291_030 Hb_012522_030--Hb_002291_030 Hb_001711_030 Hb_001711_030 Hb_012522_030--Hb_001711_030 Hb_000419_040 Hb_000419_040 Hb_012522_030--Hb_000419_040 Hb_002282_020 Hb_002282_020 Hb_012522_030--Hb_002282_020 Hb_015934_020 Hb_015934_020 Hb_002387_060--Hb_015934_020 Hb_000085_300 Hb_000085_300 Hb_002387_060--Hb_000085_300 Hb_183963_020 Hb_183963_020 Hb_002387_060--Hb_183963_020 Hb_000032_220 Hb_000032_220 Hb_002387_060--Hb_000032_220 Hb_002387_060--Hb_002291_030 Hb_005455_070 Hb_005455_070 Hb_002326_030--Hb_005455_070 Hb_000861_040 Hb_000861_040 Hb_002326_030--Hb_000861_040 Hb_000173_170 Hb_000173_170 Hb_002326_030--Hb_000173_170 Hb_001473_130 Hb_001473_130 Hb_002326_030--Hb_001473_130 Hb_007229_060 Hb_007229_060 Hb_002326_030--Hb_007229_060 Hb_002928_110 Hb_002928_110 Hb_002291_030--Hb_002928_110 Hb_002291_030--Hb_002326_030 Hb_001478_050 Hb_001478_050 Hb_002291_030--Hb_001478_050 Hb_092706_020 Hb_092706_020 Hb_002291_030--Hb_092706_020 Hb_001863_480 Hb_001863_480 Hb_001711_030--Hb_001863_480 Hb_000051_040 Hb_000051_040 Hb_001711_030--Hb_000051_040 Hb_002527_070 Hb_002527_070 Hb_001711_030--Hb_002527_070 Hb_000922_270 Hb_000922_270 Hb_001711_030--Hb_000922_270 Hb_001439_170 Hb_001439_170 Hb_001711_030--Hb_001439_170 Hb_002936_050 Hb_002936_050 Hb_000419_040--Hb_002936_050 Hb_009265_060 Hb_009265_060 Hb_000419_040--Hb_009265_060 Hb_000419_040--Hb_001863_480 Hb_171554_080 Hb_171554_080 Hb_000419_040--Hb_171554_080 Hb_000345_030 Hb_000345_030 Hb_000419_040--Hb_000345_030 Hb_002282_020--Hb_002527_070 Hb_002282_020--Hb_000861_040 Hb_002282_020--Hb_002326_030 Hb_002539_080 Hb_002539_080 Hb_002282_020--Hb_002539_080 Hb_024650_020 Hb_024650_020 Hb_002282_020--Hb_024650_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
94.2548 8.11329 9.66805 11.3435 49.1317 67.9388
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
150.703 110.184 143.323 17.1469 10.3654

CAGE analysis