Hb_012532_030

Information

Type -
Description -
Location Contig12532: 23065-24931
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012532_030 0.0 - - -
2 Hb_078604_010 0.1914023012 - - -
3 Hb_008442_010 0.2029623782 - - PREDICTED: nudix hydrolase 16, mitochondrial-like [Citrus sinensis]
4 Hb_015401_010 0.209996698 - - hypothetical protein VITISV_001548 [Vitis vinifera]
5 Hb_004374_180 0.2220336842 - - GMP synthase, putative [Ricinus communis]
6 Hb_001405_130 0.2324859476 - - PREDICTED: uncharacterized protein LOC102587892 [Solanum tuberosum]
7 Hb_013492_010 0.2347853754 - - PREDICTED: uncharacterized protein LOC105640364 [Jatropha curcas]
8 Hb_002045_140 0.2375974194 - - histone acetyltransferase, partial [Triticum aestivum]
9 Hb_029888_020 0.2427843167 - - hypothetical protein PHAVU_007G268100g [Phaseolus vulgaris]
10 Hb_005199_010 0.2568367859 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007574_060 0.2576349141 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 27-like [Jatropha curcas]
12 Hb_000562_080 0.2592860892 - - conserved hypothetical protein [Ricinus communis]
13 Hb_082407_010 0.2607933536 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
14 Hb_133311_010 0.2622844719 - - PREDICTED: U-box domain-containing protein 62-like isoform X1 [Glycine max]
15 Hb_007333_010 0.2668714659 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_127008_010 0.2671062173 - - PREDICTED: uncharacterized protein LOC105629501 [Jatropha curcas]
17 Hb_012135_010 0.2682581186 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
18 Hb_000529_100 0.2695293715 - - hypothetical protein POPTR_0009s05980g [Populus trichocarpa]
19 Hb_000959_310 0.2704097353 - - PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]
20 Hb_004502_080 0.2709313429 - - hypothetical protein JCGZ_23578 [Jatropha curcas]

Gene co-expression network

sample Hb_012532_030 Hb_012532_030 Hb_078604_010 Hb_078604_010 Hb_012532_030--Hb_078604_010 Hb_008442_010 Hb_008442_010 Hb_012532_030--Hb_008442_010 Hb_015401_010 Hb_015401_010 Hb_012532_030--Hb_015401_010 Hb_004374_180 Hb_004374_180 Hb_012532_030--Hb_004374_180 Hb_001405_130 Hb_001405_130 Hb_012532_030--Hb_001405_130 Hb_013492_010 Hb_013492_010 Hb_012532_030--Hb_013492_010 Hb_078604_010--Hb_015401_010 Hb_086859_010 Hb_086859_010 Hb_078604_010--Hb_086859_010 Hb_056768_010 Hb_056768_010 Hb_078604_010--Hb_056768_010 Hb_029982_010 Hb_029982_010 Hb_078604_010--Hb_029982_010 Hb_004502_080 Hb_004502_080 Hb_078604_010--Hb_004502_080 Hb_008442_010--Hb_013492_010 Hb_000025_100 Hb_000025_100 Hb_008442_010--Hb_000025_100 Hb_008442_010--Hb_001405_130 Hb_029888_020 Hb_029888_020 Hb_008442_010--Hb_029888_020 Hb_121550_010 Hb_121550_010 Hb_008442_010--Hb_121550_010 Hb_147123_010 Hb_147123_010 Hb_008442_010--Hb_147123_010 Hb_015401_010--Hb_001405_130 Hb_015401_010--Hb_056768_010 Hb_000348_040 Hb_000348_040 Hb_015401_010--Hb_000348_040 Hb_007574_060 Hb_007574_060 Hb_015401_010--Hb_007574_060 Hb_068922_010 Hb_068922_010 Hb_004374_180--Hb_068922_010 Hb_004374_180--Hb_013492_010 Hb_000959_310 Hb_000959_310 Hb_004374_180--Hb_000959_310 Hb_010068_100 Hb_010068_100 Hb_004374_180--Hb_010068_100 Hb_002228_100 Hb_002228_100 Hb_004374_180--Hb_002228_100 Hb_000562_080 Hb_000562_080 Hb_001405_130--Hb_000562_080 Hb_001405_130--Hb_013492_010 Hb_004048_010 Hb_004048_010 Hb_001405_130--Hb_004048_010 Hb_005199_010 Hb_005199_010 Hb_001405_130--Hb_005199_010 Hb_003405_060 Hb_003405_060 Hb_001405_130--Hb_003405_060 Hb_082407_010 Hb_082407_010 Hb_013492_010--Hb_082407_010 Hb_163599_010 Hb_163599_010 Hb_013492_010--Hb_163599_010 Hb_013492_010--Hb_003405_060 Hb_014834_140 Hb_014834_140 Hb_013492_010--Hb_014834_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.409519 0.057706 0.869805 0.217225 0.200637 1.1945
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.37405 1.45472 0 0.0167286 0

CAGE analysis