Hb_012539_020

Information

Type -
Description -
Location Contig12539: 36905-47652
Sequence    

Annotation

kegg
ID rcu:RCOM_0287850
description ubiquitin-conjugating enzyme E2, putative (EC:6.3.2.19)
nr
ID ADV04064.1
description protein binding/ubiquitin-protein ligase 4 [Hevea brasiliensis]
swissprot
ID Q8LGF7
description Protein PEROXIN-4 OS=Arabidopsis thaliana GN=PEX4 PE=1 SV=1
trembl
ID F8RWT3
description Protein binding/ubiquitin-protein ligase 4 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005622
description protein peroxin-4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07783: 42963-47625 , PASA_asmbl_07784: 45296-45785 , PASA_asmbl_07785: 44795-45259
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012539_020 0.0 - - protein binding/ubiquitin-protein ligase 4 [Hevea brasiliensis]
2 Hb_000389_080 0.0527143256 - - PREDICTED: uncharacterized protein At4g26485-like [Jatropha curcas]
3 Hb_005914_200 0.0652093533 - - PREDICTED: 60S ribosomal protein L23-like isoform X1 [Tarenaya hassleriana]
4 Hb_001780_050 0.0673479786 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Jatropha curcas]
5 Hb_000300_390 0.0730206125 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
6 Hb_002316_120 0.073920128 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
7 Hb_005663_120 0.0749845515 - - PREDICTED: uncharacterized protein LOC105635265 [Jatropha curcas]
8 Hb_000236_150 0.0792537273 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
9 Hb_000163_210 0.0799817506 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Tarenaya hassleriana]
10 Hb_000163_130 0.0821656778 - - hypothetical protein CICLE_v10022870mg [Citrus clementina]
11 Hb_000069_140 0.0840215032 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
12 Hb_120823_010 0.0844762161 - - -
13 Hb_000224_090 0.0848327333 - - Eukaryotic translation initiation factor 1A [Gossypium arboreum]
14 Hb_002518_290 0.0889790737 - - Acyl-coenzyme A thioesterase 13 [Gossypium arboreum]
15 Hb_000260_200 0.0897484758 - - -
16 Hb_000976_250 0.0905336116 - - -
17 Hb_000780_210 0.0907553714 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
18 Hb_001155_040 0.0918002025 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
19 Hb_007317_160 0.0929253581 - - PREDICTED: uncharacterized protein At2g27730, mitochondrial [Jatropha curcas]
20 Hb_001377_380 0.0934120964 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]

Gene co-expression network

sample Hb_012539_020 Hb_012539_020 Hb_000389_080 Hb_000389_080 Hb_012539_020--Hb_000389_080 Hb_005914_200 Hb_005914_200 Hb_012539_020--Hb_005914_200 Hb_001780_050 Hb_001780_050 Hb_012539_020--Hb_001780_050 Hb_000300_390 Hb_000300_390 Hb_012539_020--Hb_000300_390 Hb_002316_120 Hb_002316_120 Hb_012539_020--Hb_002316_120 Hb_005663_120 Hb_005663_120 Hb_012539_020--Hb_005663_120 Hb_000389_080--Hb_001780_050 Hb_000163_130 Hb_000163_130 Hb_000389_080--Hb_000163_130 Hb_000905_180 Hb_000905_180 Hb_000389_080--Hb_000905_180 Hb_001155_040 Hb_001155_040 Hb_000389_080--Hb_001155_040 Hb_003053_030 Hb_003053_030 Hb_000389_080--Hb_003053_030 Hb_005914_200--Hb_001780_050 Hb_000236_150 Hb_000236_150 Hb_005914_200--Hb_000236_150 Hb_004754_070 Hb_004754_070 Hb_005914_200--Hb_004754_070 Hb_005914_200--Hb_000163_130 Hb_000976_250 Hb_000976_250 Hb_005914_200--Hb_000976_250 Hb_001780_050--Hb_000163_130 Hb_001780_050--Hb_004754_070 Hb_001780_050--Hb_000236_150 Hb_012395_130 Hb_012395_130 Hb_001780_050--Hb_012395_130 Hb_000300_390--Hb_002316_120 Hb_000789_110 Hb_000789_110 Hb_000300_390--Hb_000789_110 Hb_000300_390--Hb_005663_120 Hb_120823_010 Hb_120823_010 Hb_000300_390--Hb_120823_010 Hb_032969_030 Hb_032969_030 Hb_000300_390--Hb_032969_030 Hb_002316_120--Hb_000789_110 Hb_000270_720 Hb_000270_720 Hb_002316_120--Hb_000270_720 Hb_001377_380 Hb_001377_380 Hb_002316_120--Hb_001377_380 Hb_004007_180 Hb_004007_180 Hb_002316_120--Hb_004007_180 Hb_005663_120--Hb_002316_120 Hb_005663_120--Hb_032969_030 Hb_005527_040 Hb_005527_040 Hb_005663_120--Hb_005527_040 Hb_005663_120--Hb_000389_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.91419 2.34537 5.21068 15.568 6.96587 13.6156
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
48.8857 66.5038 33.9299 15.3014 9.68771

CAGE analysis