Hb_012539_040

Information

Type transcription factor
Description TF Family: CPP
Location Contig12539: 60785-65549
Sequence    

Annotation

kegg
ID rcu:RCOM_0802400
description transcription factor, putative
nr
ID KDP34194.1
description hypothetical protein JCGZ_07765 [Jatropha curcas]
swissprot
ID Q9SZD1
description Protein tesmin/TSO1-like CXC 5 OS=Arabidopsis thaliana GN=TCX5 PE=1 SV=1
trembl
ID A0A067KQW4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07765 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07790: 61932-63631
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012539_040 0.0 transcription factor TF Family: CPP hypothetical protein JCGZ_07765 [Jatropha curcas]
2 Hb_004324_120 0.0959642463 - - ATP-dependent zinc metalloprotease YME1L1 [Gossypium arboreum]
3 Hb_005015_020 0.1039833313 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
4 Hb_004346_040 0.1044404405 - - hypothetical protein POPTR_0016s06630g [Populus trichocarpa]
5 Hb_140389_010 0.1160844977 - - Ran GTPase binding protein, putative [Ricinus communis]
6 Hb_000093_140 0.1198324709 - - PREDICTED: fructokinase-like 2, chloroplastic [Jatropha curcas]
7 Hb_000933_110 0.1258665917 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 3 [Jatropha curcas]
8 Hb_004223_270 0.13856853 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
9 Hb_006277_080 0.1393529607 - - PREDICTED: uncharacterized protein LOC105649701 [Jatropha curcas]
10 Hb_000446_040 0.1413280981 - - PREDICTED: uncharacterized protein ycf45 [Jatropha curcas]
11 Hb_003055_070 0.1462251998 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
12 Hb_000005_100 0.1470428651 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
13 Hb_001386_020 0.1495405297 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005116_100 0.1500413149 - - PREDICTED: uncharacterized protein LOC105649999 [Jatropha curcas]
15 Hb_005288_180 0.150509103 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_022425_050 0.1513815046 - - PREDICTED: probable lactoylglutathione lyase, chloroplast isoform X1 [Jatropha curcas]
17 Hb_002447_050 0.1531368634 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_000254_110 0.1538297682 - - PREDICTED: dynein light chain 1, cytoplasmic-like [Jatropha curcas]
19 Hb_000665_070 0.1539101634 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 3 isoform X1 [Jatropha curcas]
20 Hb_013968_010 0.155329668 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]

Gene co-expression network

sample Hb_012539_040 Hb_012539_040 Hb_004324_120 Hb_004324_120 Hb_012539_040--Hb_004324_120 Hb_005015_020 Hb_005015_020 Hb_012539_040--Hb_005015_020 Hb_004346_040 Hb_004346_040 Hb_012539_040--Hb_004346_040 Hb_140389_010 Hb_140389_010 Hb_012539_040--Hb_140389_010 Hb_000093_140 Hb_000093_140 Hb_012539_040--Hb_000093_140 Hb_000933_110 Hb_000933_110 Hb_012539_040--Hb_000933_110 Hb_004324_120--Hb_005015_020 Hb_004324_120--Hb_004346_040 Hb_005288_180 Hb_005288_180 Hb_004324_120--Hb_005288_180 Hb_137600_010 Hb_137600_010 Hb_004324_120--Hb_137600_010 Hb_000446_040 Hb_000446_040 Hb_004324_120--Hb_000446_040 Hb_005015_020--Hb_004346_040 Hb_005015_020--Hb_005288_180 Hb_005015_020--Hb_000446_040 Hb_002799_130 Hb_002799_130 Hb_005015_020--Hb_002799_130 Hb_004346_040--Hb_000093_140 Hb_000906_070 Hb_000906_070 Hb_004346_040--Hb_000906_070 Hb_013968_010 Hb_013968_010 Hb_004346_040--Hb_013968_010 Hb_002447_050 Hb_002447_050 Hb_004346_040--Hb_002447_050 Hb_006277_080 Hb_006277_080 Hb_140389_010--Hb_006277_080 Hb_000574_320 Hb_000574_320 Hb_140389_010--Hb_000574_320 Hb_140389_010--Hb_005015_020 Hb_140389_010--Hb_004324_120 Hb_140389_010--Hb_005288_180 Hb_003894_060 Hb_003894_060 Hb_000093_140--Hb_003894_060 Hb_003055_070 Hb_003055_070 Hb_000093_140--Hb_003055_070 Hb_007765_130 Hb_007765_130 Hb_000093_140--Hb_007765_130 Hb_005214_070 Hb_005214_070 Hb_000093_140--Hb_005214_070 Hb_000093_140--Hb_004324_120 Hb_004223_270 Hb_004223_270 Hb_000933_110--Hb_004223_270 Hb_000334_050 Hb_000334_050 Hb_000933_110--Hb_000334_050 Hb_000260_160 Hb_000260_160 Hb_000933_110--Hb_000260_160 Hb_000933_110--Hb_000446_040 Hb_000933_110--Hb_004346_040 Hb_027445_100 Hb_027445_100 Hb_000933_110--Hb_027445_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.541369 2.47471 4.18883 1.07921 0.450365 0.557817
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.513862 0.252665 0.0474258 1.00888 4.96361

CAGE analysis