Hb_012539_080

Information

Type -
Description -
Location Contig12539: 95792-99541
Sequence    

Annotation

kegg
ID bvg:104907627
description uncharacterized LOC104907627
nr
ID AAT40504.2
description Polyprotein, putative [Solanum demissum]
swissprot
ID -
description -
trembl
ID Q6L4B3
description Polyprotein, putative OS=Solanum demissum GN=SDM1_19t00015 PE=4 SV=2
Gene Ontology
ID GO:0016740
description rna-directed dna polymerase (reverse transcriptase)

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07798: 98957-99153
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012539_080 0.0 - - Polyprotein, putative [Solanum demissum]
2 Hb_004392_030 0.0430286715 - - oxidoreductase family protein [Populus trichocarpa]
3 Hb_043935_010 0.0740378664 - - Receptor protein kinase-like protein [Medicago truncatula]
4 Hb_006147_020 0.0838060861 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002835_050 0.0863399551 - - PREDICTED: high-affinity nitrate transporter 3.1-like [Jatropha curcas]
6 Hb_000907_130 0.099353768 - - -
7 Hb_113379_010 0.0997805596 - - PREDICTED: beta-xylosidase/alpha-L-arabinofuranosidase 1 [Jatropha curcas]
8 Hb_010381_080 0.1001809587 - - cytochrome P450, putative [Ricinus communis]
9 Hb_005155_030 0.1084500156 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
10 Hb_114893_010 0.1087957426 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
11 Hb_002659_050 0.1140973641 - - PREDICTED: AT-hook motif nuclear-localized protein 10 isoform X3 [Jatropha curcas]
12 Hb_004242_200 0.1147640132 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s44130g [Populus trichocarpa]
13 Hb_001300_240 0.114948693 - - shikimate dehydrogenase, putative [Ricinus communis]
14 Hb_001384_040 0.1151384975 - - PREDICTED: beta-glucosidase 17-like [Jatropha curcas]
15 Hb_176680_010 0.1184323053 - - hypothetical protein JCGZ_22787 [Jatropha curcas]
16 Hb_006053_020 0.1250223878 - - CAP [Theobroma cacao]
17 Hb_015817_010 0.1278020405 - - PREDICTED: putative receptor protein kinase ZmPK1 [Jatropha curcas]
18 Hb_011618_010 0.1306245825 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
19 Hb_039435_020 0.1318187976 - - Lysosomal Pro-X carboxypeptidase, putative [Ricinus communis]
20 Hb_002122_070 0.1358076242 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_012539_080 Hb_012539_080 Hb_004392_030 Hb_004392_030 Hb_012539_080--Hb_004392_030 Hb_043935_010 Hb_043935_010 Hb_012539_080--Hb_043935_010 Hb_006147_020 Hb_006147_020 Hb_012539_080--Hb_006147_020 Hb_002835_050 Hb_002835_050 Hb_012539_080--Hb_002835_050 Hb_000907_130 Hb_000907_130 Hb_012539_080--Hb_000907_130 Hb_113379_010 Hb_113379_010 Hb_012539_080--Hb_113379_010 Hb_004392_030--Hb_006147_020 Hb_004392_030--Hb_043935_010 Hb_004392_030--Hb_002835_050 Hb_010381_080 Hb_010381_080 Hb_004392_030--Hb_010381_080 Hb_015817_010 Hb_015817_010 Hb_004392_030--Hb_015817_010 Hb_043935_010--Hb_015817_010 Hb_043935_010--Hb_006147_020 Hb_043935_010--Hb_010381_080 Hb_002659_050 Hb_002659_050 Hb_043935_010--Hb_002659_050 Hb_006147_020--Hb_015817_010 Hb_006147_020--Hb_010381_080 Hb_080791_010 Hb_080791_010 Hb_006147_020--Hb_080791_010 Hb_002835_050--Hb_000907_130 Hb_005155_030 Hb_005155_030 Hb_002835_050--Hb_005155_030 Hb_003030_050 Hb_003030_050 Hb_002835_050--Hb_003030_050 Hb_097783_030 Hb_097783_030 Hb_002835_050--Hb_097783_030 Hb_000907_130--Hb_005155_030 Hb_000907_130--Hb_097783_030 Hb_000907_130--Hb_003030_050 Hb_000907_130--Hb_043935_010 Hb_001384_040 Hb_001384_040 Hb_113379_010--Hb_001384_040 Hb_002740_060 Hb_002740_060 Hb_113379_010--Hb_002740_060 Hb_011618_010 Hb_011618_010 Hb_113379_010--Hb_011618_010 Hb_113379_010--Hb_005155_030 Hb_114893_010 Hb_114893_010 Hb_113379_010--Hb_114893_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0190292 0.00979561 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00889533 0.0468294

CAGE analysis