Hb_012545_040

Information

Type -
Description -
Location Contig12545: 26303-32536
Sequence    

Annotation

kegg
ID pxb:103959538
description uroporphyrinogen-III synthase, chloroplastic-like
nr
ID XP_012071697.1
description PREDICTED: uroporphyrinogen-III synthase, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID O48721
description Uroporphyrinogen-III synthase, chloroplastic OS=Arabidopsis thaliana GN=UROS PE=2 SV=2
trembl
ID A0A067L1M8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04315 PE=4 SV=1
Gene Ontology
ID GO:0004852
description uroporphyrinogen-iii chloroplastic isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07811: 26311-32799 , PASA_asmbl_07812: 29098-32217
cDNA
(Sanger)
(ID:Location)		 009_N02.ab1: 26311-31532

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012545_040 0.0 - - PREDICTED: uroporphyrinogen-III synthase, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_000000_180 0.0768630336 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
3 Hb_004459_060 0.0987823787 - - 50S ribosomal protein L34, chloroplast precursor, putative [Ricinus communis]
4 Hb_005914_050 0.1084417023 - - PREDICTED: 50S ribosomal protein L28, chloroplastic [Jatropha curcas]
5 Hb_006620_070 0.1116311018 - - chloroplast 30S ribosomal protein S13 [Hevea brasiliensis]
6 Hb_002411_100 0.1189697741 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
7 Hb_000146_030 0.1245036441 - - PREDICTED: 50S ribosomal protein L10, chloroplastic [Jatropha curcas]
8 Hb_001711_060 0.1250398587 - - PREDICTED: ferredoxin isoform X1 [Jatropha curcas]
9 Hb_011114_020 0.1273904598 - - PREDICTED: 50S ribosomal protein L12-1, chloroplastic-like [Jatropha curcas]
10 Hb_003948_020 0.1321073679 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
11 Hb_000005_130 0.1333154557 - - hypothetical protein POPTR_0004s22660g [Populus trichocarpa]
12 Hb_003038_100 0.1339459403 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
13 Hb_002150_130 0.1359614074 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
14 Hb_003209_010 0.1363247152 - - hypothetical protein POPTR_0010s16880g [Populus trichocarpa]
15 Hb_002272_220 0.1392113527 - - conserved hypothetical protein [Ricinus communis]
16 Hb_169209_010 0.1400937504 - - PREDICTED: porphobilinogen deaminase, chloroplastic [Jatropha curcas]
17 Hb_001386_090 0.140219008 - - PREDICTED: uncharacterized protein LOC105632529 [Jatropha curcas]
18 Hb_001519_170 0.1418067467 - - PREDICTED: K(+) efflux antiporter 3, chloroplastic [Jatropha curcas]
19 Hb_023732_050 0.1426658524 - - aldo-keto reductase, putative [Ricinus communis]
20 Hb_001124_190 0.1434193919 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_012545_040 Hb_012545_040 Hb_000000_180 Hb_000000_180 Hb_012545_040--Hb_000000_180 Hb_004459_060 Hb_004459_060 Hb_012545_040--Hb_004459_060 Hb_005914_050 Hb_005914_050 Hb_012545_040--Hb_005914_050 Hb_006620_070 Hb_006620_070 Hb_012545_040--Hb_006620_070 Hb_002411_100 Hb_002411_100 Hb_012545_040--Hb_002411_100 Hb_000146_030 Hb_000146_030 Hb_012545_040--Hb_000146_030 Hb_001519_170 Hb_001519_170 Hb_000000_180--Hb_001519_170 Hb_000000_180--Hb_000146_030 Hb_011114_020 Hb_011114_020 Hb_000000_180--Hb_011114_020 Hb_001711_060 Hb_001711_060 Hb_000000_180--Hb_001711_060 Hb_000000_180--Hb_004459_060 Hb_004459_060--Hb_006620_070 Hb_007694_060 Hb_007694_060 Hb_004459_060--Hb_007694_060 Hb_004459_060--Hb_000146_030 Hb_004459_060--Hb_002411_100 Hb_000005_130 Hb_000005_130 Hb_004459_060--Hb_000005_130 Hb_002150_130 Hb_002150_130 Hb_005914_050--Hb_002150_130 Hb_003209_010 Hb_003209_010 Hb_005914_050--Hb_003209_010 Hb_001124_190 Hb_001124_190 Hb_005914_050--Hb_001124_190 Hb_000176_010 Hb_000176_010 Hb_005914_050--Hb_000176_010 Hb_000676_020 Hb_000676_020 Hb_005914_050--Hb_000676_020 Hb_001405_090 Hb_001405_090 Hb_006620_070--Hb_001405_090 Hb_006620_070--Hb_007694_060 Hb_006620_070--Hb_000005_130 Hb_006620_070--Hb_002411_100 Hb_000442_070 Hb_000442_070 Hb_006620_070--Hb_000442_070 Hb_003948_020 Hb_003948_020 Hb_002411_100--Hb_003948_020 Hb_010557_010 Hb_010557_010 Hb_002411_100--Hb_010557_010 Hb_000703_070 Hb_000703_070 Hb_002411_100--Hb_000703_070 Hb_001047_180 Hb_001047_180 Hb_002411_100--Hb_001047_180 Hb_005563_040 Hb_005563_040 Hb_002411_100--Hb_005563_040 Hb_000146_030--Hb_001047_180 Hb_000146_030--Hb_002411_100 Hb_000402_020 Hb_000402_020 Hb_000146_030--Hb_000402_020 Hb_004007_170 Hb_004007_170 Hb_000146_030--Hb_004007_170 Hb_000322_040 Hb_000322_040 Hb_000146_030--Hb_000322_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.500127 0.256692 6.98169 2.71162 0.358796 0.337779
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.891349 1.73768 0.625024 0.524759 5.18434

CAGE analysis