Hb_012564_030

Information

Type -
Description -
Location Contig12564: 63739-68657
Sequence    

Annotation

kegg
ID rcu:RCOM_0498810
description Coronatine-insensitive protein, putative
nr
ID ABV72393.1
description coronatine-insensitive 1 [Hevea brasiliensis]
swissprot
ID O04197
description Coronatine-insensitive protein 1 OS=Arabidopsis thaliana GN=COI1 PE=1 SV=1
trembl
ID A8HSC8
description Coronatine-insensitive 1 OS=Hevea brasiliensis GN=COI1 PE=2 SV=1
Gene Ontology
ID GO:0006511
description coronatine-insensitive protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07824: 66994-67242 , PASA_asmbl_07825: 63134-68248 , PASA_asmbl_07826: 63283-68295
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012564_030 0.0 - - coronatine-insensitive 1 [Hevea brasiliensis]
2 Hb_048219_010 0.0562762887 - - coronatine-insensitive 1 [Hevea brasiliensis]
3 Hb_001856_230 0.0600200008 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
4 Hb_005016_160 0.0706058558 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
5 Hb_003544_110 0.0719139243 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 [Jatropha curcas]
6 Hb_000331_670 0.0743181335 - - PREDICTED: protein tipD [Jatropha curcas]
7 Hb_012055_060 0.0745789728 - - PREDICTED: uncharacterized protein LOC105639799 isoform X1 [Jatropha curcas]
8 Hb_005541_010 0.0754984245 - - PREDICTED: uncharacterized protein LOC105629250 [Jatropha curcas]
9 Hb_000334_220 0.0774552387 - - hypothetical protein JCGZ_16772 [Jatropha curcas]
10 Hb_001828_130 0.0777639871 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
11 Hb_011491_010 0.0782014387 - - Protein YME1, putative [Ricinus communis]
12 Hb_000049_260 0.0810396161 - - WD-repeat protein, putative [Ricinus communis]
13 Hb_002798_070 0.08267518 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
14 Hb_001818_070 0.0830648324 - - carbon catabolite repressor protein, putative [Ricinus communis]
15 Hb_002818_030 0.0876713891 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
16 Hb_140506_010 0.0892814819 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like [Jatropha curcas]
17 Hb_000866_120 0.0901837326 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12 [Jatropha curcas]
18 Hb_002234_170 0.0915420638 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Jatropha curcas]
19 Hb_001005_190 0.0919081571 - - PREDICTED: UPF0496 protein At3g19330-like isoform X1 [Jatropha curcas]
20 Hb_002783_040 0.0939927946 transcription factor TF Family: IWS1 -

Gene co-expression network

sample Hb_012564_030 Hb_012564_030 Hb_048219_010 Hb_048219_010 Hb_012564_030--Hb_048219_010 Hb_001856_230 Hb_001856_230 Hb_012564_030--Hb_001856_230 Hb_005016_160 Hb_005016_160 Hb_012564_030--Hb_005016_160 Hb_003544_110 Hb_003544_110 Hb_012564_030--Hb_003544_110 Hb_000331_670 Hb_000331_670 Hb_012564_030--Hb_000331_670 Hb_012055_060 Hb_012055_060 Hb_012564_030--Hb_012055_060 Hb_004767_050 Hb_004767_050 Hb_048219_010--Hb_004767_050 Hb_001818_070 Hb_001818_070 Hb_048219_010--Hb_001818_070 Hb_048219_010--Hb_001856_230 Hb_048219_010--Hb_003544_110 Hb_011491_010 Hb_011491_010 Hb_048219_010--Hb_011491_010 Hb_001856_230--Hb_003544_110 Hb_007532_030 Hb_007532_030 Hb_001856_230--Hb_007532_030 Hb_001856_230--Hb_000331_670 Hb_002374_310 Hb_002374_310 Hb_001856_230--Hb_002374_310 Hb_005541_010 Hb_005541_010 Hb_005016_160--Hb_005541_010 Hb_000334_220 Hb_000334_220 Hb_005016_160--Hb_000334_220 Hb_005016_160--Hb_012055_060 Hb_003052_140 Hb_003052_140 Hb_005016_160--Hb_003052_140 Hb_000336_250 Hb_000336_250 Hb_005016_160--Hb_000336_250 Hb_001366_310 Hb_001366_310 Hb_003544_110--Hb_001366_310 Hb_002818_030 Hb_002818_030 Hb_003544_110--Hb_002818_030 Hb_003494_020 Hb_003494_020 Hb_003544_110--Hb_003494_020 Hb_004916_010 Hb_004916_010 Hb_003544_110--Hb_004916_010 Hb_015934_040 Hb_015934_040 Hb_000331_670--Hb_015934_040 Hb_003211_020 Hb_003211_020 Hb_000331_670--Hb_003211_020 Hb_001157_040 Hb_001157_040 Hb_000331_670--Hb_001157_040 Hb_007163_120 Hb_007163_120 Hb_000331_670--Hb_007163_120 Hb_013399_100 Hb_013399_100 Hb_000331_670--Hb_013399_100 Hb_021576_110 Hb_021576_110 Hb_000331_670--Hb_021576_110 Hb_000243_250 Hb_000243_250 Hb_012055_060--Hb_000243_250 Hb_003055_060 Hb_003055_060 Hb_012055_060--Hb_003055_060 Hb_001005_190 Hb_001005_190 Hb_012055_060--Hb_001005_190 Hb_012055_060--Hb_011491_010 Hb_008511_090 Hb_008511_090 Hb_012055_060--Hb_008511_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
63.9096 113.06 36.7684 52.628 47.7331 58.8264
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.797 64.4995 86.7463 34.7478 42.6331

CAGE analysis