Hb_012565_010

Information

Type -
Description -
Location Contig12565: 5803-7341
Sequence    

Annotation

kegg
ID cic:CICLE_v10011795mg
description hypothetical protein
nr
ID XP_012078006.1
description PREDICTED: putative glutamine amidotransferase PB2B2.05 [Jatropha curcas]
swissprot
ID Q9HDV0
description Putative glutamine amidotransferase PB2B2.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBPB2B2.05 PE=3 SV=2
trembl
ID V4S8Y4
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10011795mg PE=4 SV=1
Gene Ontology
ID GO:0003922
description glutamine amidotransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07828: 5995-7216
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012565_010 0.0 - - PREDICTED: putative glutamine amidotransferase PB2B2.05 [Jatropha curcas]
2 Hb_002675_170 0.1016872835 - - hypothetical protein JCGZ_06235 [Jatropha curcas]
3 Hb_002193_070 0.1511842248 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_011900_040 0.1746752357 - - PREDICTED: microtubule-associated protein 70-5 [Jatropha curcas]
5 Hb_011169_010 0.181179138 - - mta/sah nucleosidase, putative [Ricinus communis]
6 Hb_005455_100 0.1852821443 - - amino acid transporter, putative [Ricinus communis]
7 Hb_000617_300 0.1884554718 - - RALFL33, putative [Ricinus communis]
8 Hb_001335_040 0.1906561858 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003020_200 0.1908737345 - - PREDICTED: uncharacterized protein LOC105131117 [Populus euphratica]
10 Hb_000995_020 0.1924685439 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001157_210 0.2006753424 - - hypothetical protein CISIN_1g038260mg [Citrus sinensis]
12 Hb_102772_010 0.2046191379 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002192_040 0.2053337971 - - -
14 Hb_007311_050 0.2135913804 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000115_210 0.2143906702 transcription factor TF Family: bHLH PREDICTED: transcription factor BEE 3-like [Jatropha curcas]
16 Hb_000107_240 0.2176381554 - - organic anion transporter, putative [Ricinus communis]
17 Hb_002316_010 0.2211798685 - - hypothetical protein JCGZ_11498 [Jatropha curcas]
18 Hb_000868_020 0.2240805919 - - -
19 Hb_000087_010 0.2244690149 - - mta/sah nucleosidase, putative [Ricinus communis]
20 Hb_000307_160 0.225078432 - - PREDICTED: uncharacterized protein At1g76070 [Jatropha curcas]

Gene co-expression network

sample Hb_012565_010 Hb_012565_010 Hb_002675_170 Hb_002675_170 Hb_012565_010--Hb_002675_170 Hb_002193_070 Hb_002193_070 Hb_012565_010--Hb_002193_070 Hb_011900_040 Hb_011900_040 Hb_012565_010--Hb_011900_040 Hb_011169_010 Hb_011169_010 Hb_012565_010--Hb_011169_010 Hb_005455_100 Hb_005455_100 Hb_012565_010--Hb_005455_100 Hb_000617_300 Hb_000617_300 Hb_012565_010--Hb_000617_300 Hb_002675_170--Hb_011900_040 Hb_002675_170--Hb_005455_100 Hb_001335_040 Hb_001335_040 Hb_002675_170--Hb_001335_040 Hb_002675_170--Hb_002193_070 Hb_010833_010 Hb_010833_010 Hb_002675_170--Hb_010833_010 Hb_009010_040 Hb_009010_040 Hb_002193_070--Hb_009010_040 Hb_003360_050 Hb_003360_050 Hb_002193_070--Hb_003360_050 Hb_002193_070--Hb_011900_040 Hb_002193_070--Hb_001335_040 Hb_000083_260 Hb_000083_260 Hb_011900_040--Hb_000083_260 Hb_011900_040--Hb_001335_040 Hb_005539_330 Hb_005539_330 Hb_011900_040--Hb_005539_330 Hb_000331_660 Hb_000331_660 Hb_011900_040--Hb_000331_660 Hb_000012_340 Hb_000012_340 Hb_011900_040--Hb_000012_340 Hb_000429_070 Hb_000429_070 Hb_011900_040--Hb_000429_070 Hb_003765_010 Hb_003765_010 Hb_011169_010--Hb_003765_010 Hb_000107_240 Hb_000107_240 Hb_011169_010--Hb_000107_240 Hb_003020_200 Hb_003020_200 Hb_011169_010--Hb_003020_200 Hb_000868_020 Hb_000868_020 Hb_011169_010--Hb_000868_020 Hb_000087_010 Hb_000087_010 Hb_011169_010--Hb_000087_010 Hb_103468_010 Hb_103468_010 Hb_011169_010--Hb_103468_010 Hb_005455_100--Hb_010833_010 Hb_003754_010 Hb_003754_010 Hb_005455_100--Hb_003754_010 Hb_153544_020 Hb_153544_020 Hb_005455_100--Hb_153544_020 Hb_150179_010 Hb_150179_010 Hb_005455_100--Hb_150179_010 Hb_004957_010 Hb_004957_010 Hb_005455_100--Hb_004957_010 Hb_001557_030 Hb_001557_030 Hb_005455_100--Hb_001557_030 Hb_000617_300--Hb_003020_200 Hb_003411_120 Hb_003411_120 Hb_000617_300--Hb_003411_120 Hb_001758_090 Hb_001758_090 Hb_000617_300--Hb_001758_090 Hb_003371_030 Hb_003371_030 Hb_000617_300--Hb_003371_030 Hb_019053_050 Hb_019053_050 Hb_000617_300--Hb_019053_050 Hb_000995_020 Hb_000995_020 Hb_000617_300--Hb_000995_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.033263 0 0.420418 13.483 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.227753 0.149301 1.16974 0.0477989 1.23967

CAGE analysis